miRNA display CGI


Results 101 - 120 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 55250 0.74 0.205498
Target:  5'- gGGAGCAcGCcgagcgcauUGGCGCCUuuuUGCGCgUGGCCu -3'
miRNA:   3'- -CCUCGU-CG---------ACCGCGGA---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 50354 0.74 0.205498
Target:  5'- aGGGUaaAGCUGGCGCUggccggcgUCGCccuGCUGGCCg -3'
miRNA:   3'- cCUCG--UCGACCGCGG--------AGCG---UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 30752 0.74 0.205498
Target:  5'- cGAGCGgcgcGCUGGCGCgCgcCGUGCUGGCCu -3'
miRNA:   3'- cCUCGU----CGACCGCG-Ga-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 30727 0.74 0.205498
Target:  5'- cGGcGCAGU--GCGCCgCGCGCUGGCCc -3'
miRNA:   3'- -CCuCGUCGacCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 25525 0.74 0.195887
Target:  5'- aGGcGCGGUUGGCGC---GCACCGGCUc -3'
miRNA:   3'- -CCuCGUCGACCGCGgagCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 33879 0.74 0.200642
Target:  5'- --uGCAGgaGGCGCCgcCGCGCgUGGCCg -3'
miRNA:   3'- ccuCGUCgaCCGCGGa-GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 86131 0.74 0.195887
Target:  5'- -uGGCAGauCUGGUauuuaaCCUCGCGCCGGCCc -3'
miRNA:   3'- ccUCGUC--GACCGc-----GGAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105953 0.74 0.205498
Target:  5'- gGGAGCccGGC-GGCGCCggcggCGCGgCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGaCCGCGGa----GCGU-GgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14428 0.74 0.205498
Target:  5'- cGGGGCuccGCuguuUGGCGCCgagCGCG-CGGCCg -3'
miRNA:   3'- -CCUCGu--CG----ACCGCGGa--GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14191 0.74 0.200642
Target:  5'- gGGAGgGGCUGGCGgCgggGCuggcggucagGCCGGCCg -3'
miRNA:   3'- -CCUCgUCGACCGCgGag-CG----------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 63419 0.74 0.195887
Target:  5'- gGGAGCGcacGC-GGCGCCggCGgGCCGGCg -3'
miRNA:   3'- -CCUCGU---CGaCCGCGGa-GCgUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 126910 0.74 0.200642
Target:  5'- uGAG-AGCUGGCGCgggucccagggCUCGCACUcgGGCCa -3'
miRNA:   3'- cCUCgUCGACCGCG-----------GAGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 1294 0.73 0.224885
Target:  5'- -cGGUGGCUGGcCGCCUCGCccuccacgaaguCCGGCUc -3'
miRNA:   3'- ccUCGUCGACC-GCGGAGCGu-----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 66160 0.73 0.231866
Target:  5'- cGAGCcgcugucucccgGGCUGGCGCCggccgcccccucuucCGCAUCGGCg -3'
miRNA:   3'- cCUCG------------UCGACCGCGGa--------------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 51862 0.73 0.253906
Target:  5'- aGGAggccGCAGgUGuGCGCCUCuGCGCCcGCCc -3'
miRNA:   3'- -CCU----CGUCgAC-CGCGGAG-CGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 38505 0.73 0.242395
Target:  5'- gGGGGCGGCgcggucgccGGCGCUgUGCuCUGGCCg -3'
miRNA:   3'- -CCUCGUCGa--------CCGCGGaGCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 86976 0.73 0.231322
Target:  5'- aGGAcGCcGCcGGCcggGCCggcgCGCGCCGGCCc -3'
miRNA:   3'- -CCU-CGuCGaCCG---CGGa---GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 93108 0.73 0.225947
Target:  5'- cGGGGCgGGCUauaaaGGCGCC--GCGCCGGCa -3'
miRNA:   3'- -CCUCG-UCGA-----CCGCGGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 86504 0.73 0.236805
Target:  5'- gGGGGCGGC-GGCGCCcCGCcGCCgcGGCg -3'
miRNA:   3'- -CCUCGUCGaCCGCGGaGCG-UGG--CCGg -5'
6350 5' -62.5 NC_001847.1 + 119577 0.73 0.236805
Target:  5'- cGGGCAGCggcGGCcgcggcccgacgGCCgcgcgCGCACCGGCg -3'
miRNA:   3'- cCUCGUCGa--CCG------------CGGa----GCGUGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.