miRNA display CGI


Results 121 - 140 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 1294 0.73 0.224885
Target:  5'- -cGGUGGCUGGcCGCCUCGCccuccacgaaguCCGGCUc -3'
miRNA:   3'- ccUCGUCGACC-GCGGAGCGu-----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 2751 0.73 0.231322
Target:  5'- gGGAGCgAGCgagGGCGCCUCGUcgucuucuuCgCGGUCa -3'
miRNA:   3'- -CCUCG-UCGa--CCGCGGAGCGu--------G-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 104107 0.73 0.224885
Target:  5'- -cGGUGGCUGGcCGCCUCGCccuccacgaaguCCGGCUc -3'
miRNA:   3'- ccUCGUCGACC-GCGGAGCGu-----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 93108 0.73 0.225947
Target:  5'- cGGGGCgGGCUauaaaGGCGCC--GCGCCGGCa -3'
miRNA:   3'- -CCUCG-UCGA-----CCGCGGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 967 0.73 0.236805
Target:  5'- --cGCuGCgccgGGCGUCUaUGCGCCGGCCc -3'
miRNA:   3'- ccuCGuCGa---CCGCGGA-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 74098 0.73 0.253906
Target:  5'- -uGGCAcGCUGGUGCC-CGgGgCGGCCg -3'
miRNA:   3'- ccUCGU-CGACCGCGGaGCgUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 125079 0.73 0.248096
Target:  5'- cGGGGC-GCUGG-GCC-CGCG-CGGCCa -3'
miRNA:   3'- -CCUCGuCGACCgCGGaGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 119577 0.73 0.236805
Target:  5'- cGGGCAGCggcGGCcgcggcccgacgGCCgcgcgCGCACCGGCg -3'
miRNA:   3'- cCUCGUCGa--CCG------------CGGa----GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 86504 0.73 0.236805
Target:  5'- gGGGGCGGC-GGCGCCcCGCcGCCgcGGCg -3'
miRNA:   3'- -CCUCGUCGaCCGCGGaGCG-UGG--CCGg -5'
6350 5' -62.5 NC_001847.1 + 66160 0.73 0.231866
Target:  5'- cGAGCcgcugucucccgGGCUGGCGCCggccgcccccucuucCGCAUCGGCg -3'
miRNA:   3'- cCUCG------------UCGACCGCGGa--------------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 38505 0.73 0.242395
Target:  5'- gGGGGCGGCgcggucgccGGCGCUgUGCuCUGGCCg -3'
miRNA:   3'- -CCUCGUCGa--------CCGCGGaGCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11570 0.73 0.253906
Target:  5'- gGGuGCGGCUgccgcGGUGCCgguugcuucUGCGCUGGCCg -3'
miRNA:   3'- -CCuCGUCGA-----CCGCGGa--------GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 51862 0.73 0.253906
Target:  5'- aGGAggccGCAGgUGuGCGCCUCuGCGCCcGCCc -3'
miRNA:   3'- -CCU----CGUCgAC-CGCGGAG-CGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 80674 0.73 0.236805
Target:  5'- gGGAGCcgaacGGCUGcGCGCCggcggCgGCugCGGCUg -3'
miRNA:   3'- -CCUCG-----UCGAC-CGCGGa----G-CGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 24327 0.73 0.236805
Target:  5'- cGAGCGGUgGcGCGCCacgcCGCGCgCGGCCu -3'
miRNA:   3'- cCUCGUCGaC-CGCGGa---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14814 0.73 0.248096
Target:  5'- cGGAGCuGCgcGGCGCCcUGCGCgCGGUg -3'
miRNA:   3'- -CCUCGuCGa-CCGCGGaGCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 37936 0.73 0.253906
Target:  5'- uGGAGCAGCUgucGGCGCUgaUCGCgaGCaaGCCg -3'
miRNA:   3'- -CCUCGUCGA---CCGCGG--AGCG--UGgcCGG- -5'
6350 5' -62.5 NC_001847.1 + 35200 0.73 0.235149
Target:  5'- aGGAGCgcgcgcGGCUgGGCGCCcugCGCGCggacgugcugcaggCGGCCg -3'
miRNA:   3'- -CCUCG------UCGA-CCGCGGa--GCGUG--------------GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 84406 0.73 0.242395
Target:  5'- cGGGGCAGCcGGUGCCgca-GCCGGUg -3'
miRNA:   3'- -CCUCGUCGaCCGCGGagcgUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 86976 0.73 0.231322
Target:  5'- aGGAcGCcGCcGGCcggGCCggcgCGCGCCGGCCc -3'
miRNA:   3'- -CCU-CGuCGaCCG---CGGa---GCGUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.