miRNA display CGI


Results 101 - 120 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 131231 0.74 0.210455
Target:  5'- cGGGCGcGCaaccGGCGCC-CGCGCUGGCUa -3'
miRNA:   3'- cCUCGU-CGa---CCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 33509 0.74 0.215515
Target:  5'- cGGGCGGCggcgGGCGCCgccgcggagGCGCCGGgCg -3'
miRNA:   3'- cCUCGUCGa---CCGCGGag-------CGUGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 55440 0.74 0.215515
Target:  5'- cGGuccuGCAGCgccUGGCGCCggcggggcgCGCGCCGcGCUa -3'
miRNA:   3'- -CCu---CGUCG---ACCGCGGa--------GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 57771 0.74 0.220678
Target:  5'- cGGGGCuGCUGGUG-CUCGC-CgGGCUg -3'
miRNA:   3'- -CCUCGuCGACCGCgGAGCGuGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 54118 0.74 0.220678
Target:  5'- --cGCGGgaGGCGCa--GCACCGGCUg -3'
miRNA:   3'- ccuCGUCgaCCGCGgagCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 9612 0.74 0.220678
Target:  5'- gGGAcgaccGUAGCUGcGCccGCCgcCGCGCCGGCCc -3'
miRNA:   3'- -CCU-----CGUCGAC-CG--CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 60504 0.74 0.220678
Target:  5'- -cAGCAGCUGcccCGCCUCGCGCgaGGCg -3'
miRNA:   3'- ccUCGUCGACc--GCGGAGCGUGg-CCGg -5'
6350 5' -62.5 NC_001847.1 + 118443 0.74 0.220678
Target:  5'- uGGGGCuccuGCUGGUggcgGCCUCGUGCCugcggcgcaaGGCCc -3'
miRNA:   3'- -CCUCGu---CGACCG----CGGAGCGUGG----------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 128034 0.74 0.220678
Target:  5'- aGGAGCccGGCcgUGGCGCCUaCGUggucuccuacaACUGGCCc -3'
miRNA:   3'- -CCUCG--UCG--ACCGCGGA-GCG-----------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 34612 0.74 0.2212
Target:  5'- -cGGCGGCgcgccgaggaaguccGGCGCCUgCGCGCCgaGGCCg -3'
miRNA:   3'- ccUCGUCGa--------------CCGCGGA-GCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 126928 0.74 0.222248
Target:  5'- uGGcGCAGCUgcuucugcuggcacGGCGCCUCGaguggcuuccguCCGGCCu -3'
miRNA:   3'- -CCuCGUCGA--------------CCGCGGAGCgu----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 30989 0.74 0.222773
Target:  5'- uGGAGCAGCgaagcGGCaccauguccggcguuGCCggcgcgcgCGCGCCGGCa -3'
miRNA:   3'- -CCUCGUCGa----CCG---------------CGGa-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 1294 0.73 0.224885
Target:  5'- -cGGUGGCUGGcCGCCUCGCccuccacgaaguCCGGCUc -3'
miRNA:   3'- ccUCGUCGACC-GCGGAGCGu-----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 104107 0.73 0.224885
Target:  5'- -cGGUGGCUGGcCGCCUCGCccuccacgaaguCCGGCUc -3'
miRNA:   3'- ccUCGUCGACC-GCGGAGCGu-----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 96951 0.73 0.225947
Target:  5'- cGGGCGGCaGGCGCUcuucguUCGCGgguaCGGCCg -3'
miRNA:   3'- cCUCGUCGaCCGCGG------AGCGUg---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 93108 0.73 0.225947
Target:  5'- cGGGGCgGGCUauaaaGGCGCC--GCGCCGGCa -3'
miRNA:   3'- -CCUCG-UCGA-----CCGCGGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 98816 0.73 0.231322
Target:  5'- cGGGGCGGCaGGaCGCaccCUCGCGgCGGCg -3'
miRNA:   3'- -CCUCGUCGaCC-GCG---GAGCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 2751 0.73 0.231322
Target:  5'- gGGAGCgAGCgagGGCGCCUCGUcgucuucuuCgCGGUCa -3'
miRNA:   3'- -CCUCG-UCGa--CCGCGGAGCGu--------G-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 86976 0.73 0.231322
Target:  5'- aGGAcGCcGCcGGCcggGCCggcgCGCGCCGGCCc -3'
miRNA:   3'- -CCU-CGuCGaCCG---CGGa---GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 66160 0.73 0.231866
Target:  5'- cGAGCcgcugucucccgGGCUGGCGCCggccgcccccucuucCGCAUCGGCg -3'
miRNA:   3'- cCUCG------------UCGACCGCGGa--------------GCGUGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.