miRNA display CGI


Results 141 - 160 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 51862 0.73 0.253906
Target:  5'- aGGAggccGCAGgUGuGCGCCUCuGCGCCcGCCc -3'
miRNA:   3'- -CCU----CGUCgAC-CGCGGAG-CGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 37936 0.73 0.253906
Target:  5'- uGGAGCAGCUgucGGCGCUgaUCGCgaGCaaGCCg -3'
miRNA:   3'- -CCUCGUCGA---CCGCGG--AGCG--UGgcCGG- -5'
6350 5' -62.5 NC_001847.1 + 88198 0.72 0.25804
Target:  5'- cGGGGCuuucuGCUGccggacacccaaaaGCGCCUCGCcggagccgagGCCGGCg -3'
miRNA:   3'- -CCUCGu----CGAC--------------CGCGGAGCG----------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 76298 0.72 0.259231
Target:  5'- gGGuAGguGCgGGCccgGCCcaagugccgacccUCGCACCGGCCc -3'
miRNA:   3'- -CC-UCguCGaCCG---CGG-------------AGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 134847 0.72 0.259828
Target:  5'- cGGGGC-GCggggacGGCGCC-CGCGCgGGCUc -3'
miRNA:   3'- -CCUCGuCGa-----CCGCGGaGCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 32034 0.72 0.259828
Target:  5'- cGGGGC-GCggggacGGCGCC-CGCGCgGGCUc -3'
miRNA:   3'- -CCUCGuCGa-----CCGCGGaGCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 91099 0.72 0.259828
Target:  5'- aGGGCGGCcccgacGcGCGCCUCGCugCaGCCc -3'
miRNA:   3'- cCUCGUCGa-----C-CGCGGAGCGugGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 42482 0.72 0.265863
Target:  5'- uGGGGCGGC--GCGCCgaagCGCugCGGgCg -3'
miRNA:   3'- -CCUCGUCGacCGCGGa---GCGugGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 57403 0.72 0.265863
Target:  5'- uGGGGUAGguccgGGCggGCCUCGCACgCGcGCCa -3'
miRNA:   3'- -CCUCGUCga---CCG--CGGAGCGUG-GC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 117329 0.72 0.265863
Target:  5'- -uAGCGGCggggGGCgGCCUCGCcCCccgcGGCCg -3'
miRNA:   3'- ccUCGUCGa---CCG-CGGAGCGuGG----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 16662 0.72 0.265863
Target:  5'- -uGGCGGCgcgGGCGCgUCGCGCa-GCCu -3'
miRNA:   3'- ccUCGUCGa--CCGCGgAGCGUGgcCGG- -5'
6350 5' -62.5 NC_001847.1 + 52011 0.72 0.265863
Target:  5'- gGGAcGCAGCaGGCGCgcacuagcgCUCGCGCCaggGGCUc -3'
miRNA:   3'- -CCU-CGUCGaCCGCG---------GAGCGUGG---CCGG- -5'
6350 5' -62.5 NC_001847.1 + 46201 0.72 0.265863
Target:  5'- cGGccGGCGGC-GGcCGCCgcCGgGCCGGCCg -3'
miRNA:   3'- -CC--UCGUCGaCC-GCGGa-GCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 100867 0.72 0.265863
Target:  5'- cGAGC-GC-GGCGCCcagccgccgCGCGCCGGUCu -3'
miRNA:   3'- cCUCGuCGaCCGCGGa--------GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 19629 0.72 0.265863
Target:  5'- cGGGGC-GCcGGCGUCg-GCGCgCGGCCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGagCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 44200 0.72 0.27139
Target:  5'- aGAGcCAGCUGGUguugccccacuacGCCgUCGC-CCGGCUg -3'
miRNA:   3'- cCUC-GUCGACCG-------------CGG-AGCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 119666 0.72 0.27201
Target:  5'- uGGAGUAGUaGcGCGUCUgCGCGCCGugcGCCg -3'
miRNA:   3'- -CCUCGUCGaC-CGCGGA-GCGUGGC---CGG- -5'
6350 5' -62.5 NC_001847.1 + 35582 0.72 0.27201
Target:  5'- uGGAGCGGCgccGGCGCaagGCugCGGUa -3'
miRNA:   3'- -CCUCGUCGa--CCGCGgagCGugGCCGg -5'
6350 5' -62.5 NC_001847.1 + 22383 0.72 0.27201
Target:  5'- cGGGGCAGaaGGCGCC-CGgGCCgcGGCg -3'
miRNA:   3'- -CCUCGUCgaCCGCGGaGCgUGG--CCGg -5'
6350 5' -62.5 NC_001847.1 + 62376 0.72 0.27201
Target:  5'- --cGCAGCUGGUGCgUCaGCGCCaGCg -3'
miRNA:   3'- ccuCGUCGACCGCGgAG-CGUGGcCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.