miRNA display CGI


Results 161 - 180 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 29002 0.72 0.27201
Target:  5'- aGAGCGcgccguGCUGGCGCagcuaUCGCGCCcagaGCCg -3'
miRNA:   3'- cCUCGU------CGACCGCGg----AGCGUGGc---CGG- -5'
6350 5' -62.5 NC_001847.1 + 127754 0.72 0.27201
Target:  5'- -cAGCAGCUgcGGCGgCUUGC-CCGGCa -3'
miRNA:   3'- ccUCGUCGA--CCGCgGAGCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 35582 0.72 0.27201
Target:  5'- uGGAGCGGCgccGGCGCaagGCugCGGUa -3'
miRNA:   3'- -CCUCGUCGa--CCGCGgagCGugGCCGg -5'
6350 5' -62.5 NC_001847.1 + 70700 0.72 0.27201
Target:  5'- cGGGGCuGGCcgUGGcCGCCgacuacgaCGCGCCGGCa -3'
miRNA:   3'- -CCUCG-UCG--ACC-GCGGa-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 110944 0.72 0.278271
Target:  5'- cGGGGCgGGCgGGCcgacgaGCCUCGCggggcugcuugGCUGGCCu -3'
miRNA:   3'- -CCUCG-UCGaCCG------CGGAGCG-----------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 106730 0.72 0.278271
Target:  5'- cGGGCgccGGUUGcGCGCC-CGCGCUGGCg -3'
miRNA:   3'- cCUCG---UCGAC-CGCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 59360 0.72 0.278271
Target:  5'- cGGAGCGGC-GGCGgCagCgGCGgCGGCCg -3'
miRNA:   3'- -CCUCGUCGaCCGCgGa-G-CGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8131 0.72 0.278271
Target:  5'- cGGGGCgGGCgGGCcgacgaGCCUCGCggggcugcuugGCUGGCCu -3'
miRNA:   3'- -CCUCG-UCGaCCG------CGGAGCG-----------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3917 0.72 0.278271
Target:  5'- cGGGCgccGGUUGcGCGCC-CGCGCUGGCg -3'
miRNA:   3'- cCUCG---UCGAC-CGCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 70522 0.72 0.284003
Target:  5'- -cAGCGGCUgcugggcGGCGUgCUgGCGCUGGCCg -3'
miRNA:   3'- ccUCGUCGA-------CCGCG-GAgCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 134154 0.72 0.284646
Target:  5'- gGGGGCAGaaGGUGCgUgCGgGCCGGCg -3'
miRNA:   3'- -CCUCGUCgaCCGCGgA-GCgUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 53827 0.72 0.284646
Target:  5'- cGGGcGCGGCUGGCGgCg-GCAgCGGCg -3'
miRNA:   3'- -CCU-CGUCGACCGCgGagCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 34757 0.72 0.284646
Target:  5'- -cGGCcgAGCUGGCGCggcugCGCGCCgcGGCCg -3'
miRNA:   3'- ccUCG--UCGACCGCGga---GCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 90831 0.72 0.284646
Target:  5'- cGGGCAccgcucuggcGCUGGCccGCCgcgcCGCGCCGcGCCg -3'
miRNA:   3'- cCUCGU----------CGACCG--CGGa---GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 31749 0.72 0.284646
Target:  5'- cGAGCGGCgcgUGGUcagcgugcacccGCg-CGCGCCGGCCa -3'
miRNA:   3'- cCUCGUCG---ACCG------------CGgaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 18332 0.72 0.289177
Target:  5'- cGGAGCAGCUgccgGGCGCagUCGCGgucgcccaagaucgUCGGCg -3'
miRNA:   3'- -CCUCGUCGA----CCGCGg-AGCGU--------------GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 43784 0.72 0.290482
Target:  5'- --cGguGCUGgacgcgcGCGCCggCGCGCCGGUCg -3'
miRNA:   3'- ccuCguCGAC-------CGCGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 67841 0.72 0.291136
Target:  5'- cGGGGCuGCcGGCGCUg-GCGCgCGGCUc -3'
miRNA:   3'- -CCUCGuCGaCCGCGGagCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 134075 0.72 0.291136
Target:  5'- gGGAGCAGCgaacagcccGGCGCCgcCGCuugcuCUGGCg -3'
miRNA:   3'- -CCUCGUCGa--------CCGCGGa-GCGu----GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 114504 0.72 0.291136
Target:  5'- uGAGCcccuUUGGCGCCUCGCugCGaaacGCCu -3'
miRNA:   3'- cCUCGuc--GACCGCGGAGCGugGC----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.