miRNA display CGI


Results 121 - 140 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 105538 0.66 0.575624
Target:  5'- cGGcGGCGGCgaaguggGGCGCaaaggccggguCUCGCAagaCGGCa -3'
miRNA:   3'- -CC-UCGUCGa------CCGCG-----------GAGCGUg--GCCGg -5'
6350 5' -62.5 NC_001847.1 + 32660 0.66 0.575624
Target:  5'- cGAGguGgacGGCGCCggcgGCGCgGGCCc -3'
miRNA:   3'- cCUCguCga-CCGCGGag--CGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 134517 0.66 0.575624
Target:  5'- gGGGGCgggGGgaGGCGCgggccgCGCGCCgcugcggagcGGCCg -3'
miRNA:   3'- -CCUCG---UCgaCCGCGga----GCGUGG----------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 56359 0.66 0.575624
Target:  5'- -uGGCcacgGGCcGGCGCCUCaaggaGCCGGUCu -3'
miRNA:   3'- ccUCG----UCGaCCGCGGAGcg---UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 30351 0.66 0.575624
Target:  5'- cGAGCAccgcgcguuGCUGGCGggccaCUCgGCGCUGGUg -3'
miRNA:   3'- cCUCGU---------CGACCGCg----GAG-CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 8334 0.66 0.575624
Target:  5'- cGAGUgcgaauucugGGaCUGGCGCCaa--GCCGGCCc -3'
miRNA:   3'- cCUCG----------UC-GACCGCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 98939 0.66 0.575624
Target:  5'- aGGAGgGcGCgcaGCcCCUCGUACgCGGCCu -3'
miRNA:   3'- -CCUCgU-CGac-CGcGGAGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 117407 0.66 0.575624
Target:  5'- cGGuGCGcGCggUGGaCGCUUCGCG-CGGCUg -3'
miRNA:   3'- -CCuCGU-CG--ACC-GCGGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 15434 0.66 0.574648
Target:  5'- cGAGCugguuuaAGCUGGCGCUgcugaaaagCGUGgCGGCg -3'
miRNA:   3'- cCUCG-------UCGACCGCGGa--------GCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 102514 0.66 0.56588
Target:  5'- aGGGCAGagcGCGCgC-CGCGCCGGUg -3'
miRNA:   3'- cCUCGUCgacCGCG-GaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 42332 0.66 0.56588
Target:  5'- uGGAgGUAGC-GGCGCUccaGC-UCGGCCa -3'
miRNA:   3'- -CCU-CGUCGaCCGCGGag-CGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 4525 0.66 0.56588
Target:  5'- --cGCA-CgacGUGCCUCGCGgCGGCCg -3'
miRNA:   3'- ccuCGUcGac-CGCGGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 49249 0.66 0.56588
Target:  5'- cGGGGUGGCgccGGCGaacgcgCUCGCucagguCCGcGCCg -3'
miRNA:   3'- -CCUCGUCGa--CCGCg-----GAGCGu-----GGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 55381 0.66 0.56588
Target:  5'- -uGGUuuCUGGUGCCgcugaUCGCGCUGGCg -3'
miRNA:   3'- ccUCGucGACCGCGG-----AGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 74498 0.66 0.56588
Target:  5'- -cAGCAGCc-GCGCCU-GCGCCGcGCg -3'
miRNA:   3'- ccUCGUCGacCGCGGAgCGUGGC-CGg -5'
6350 5' -62.5 NC_001847.1 + 79632 0.66 0.56588
Target:  5'- --cGCGGCgGGCGCCgccaGCAgCagGGCCc -3'
miRNA:   3'- ccuCGUCGaCCGCGGag--CGUgG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 94879 0.66 0.56588
Target:  5'- cGGGCAGCUcgcaaauccGCGCUUCGgCGCUuGCCa -3'
miRNA:   3'- cCUCGUCGAc--------CGCGGAGC-GUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 29934 0.66 0.56588
Target:  5'- gGGAGgAGacuCUGG-GCCgagGCGCCGGCg -3'
miRNA:   3'- -CCUCgUC---GACCgCGGag-CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 77935 0.66 0.56588
Target:  5'- cGGGCGGCUGuaGCaaaCGCcGCCGGgCg -3'
miRNA:   3'- cCUCGUCGACcgCGga-GCG-UGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 49885 0.66 0.56588
Target:  5'- cGAGCuGCUGcacggcacGUGCUggGC-CCGGCCg -3'
miRNA:   3'- cCUCGuCGAC--------CGCGGagCGuGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.