miRNA display CGI


Results 141 - 160 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 4525 0.66 0.56588
Target:  5'- --cGCA-CgacGUGCCUCGCGgCGGCCg -3'
miRNA:   3'- ccuCGUcGac-CGCGGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 125472 0.66 0.564907
Target:  5'- cGGcGGCAGCUcgcggcgGGCGCgaggaCGC-CCGGCUg -3'
miRNA:   3'- -CC-UCGUCGA-------CCGCGga---GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14332 0.66 0.563936
Target:  5'- cGAGCGGCgggcagagaaggGGUGCCugcugccgacgcUCGCAgaugccaCGGCCg -3'
miRNA:   3'- cCUCGUCGa-----------CCGCGG------------AGCGUg------GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 100605 0.66 0.561994
Target:  5'- cGAGCAGCccggccaggcucgGGCccuggcgaccGCCUgGCugCGGCg -3'
miRNA:   3'- cCUCGUCGa------------CCG----------CGGAgCGugGCCGg -5'
6350 5' -62.5 NC_001847.1 + 77216 0.67 0.560054
Target:  5'- cGGAGCcgcgGGCcgccgggcccggacuUGGCGCggUCGCGCgGGCg -3'
miRNA:   3'- -CCUCG----UCG---------------ACCGCGg-AGCGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 44424 0.67 0.560054
Target:  5'- cGAGCGGCUgcguucgcgcacgggGGCGCggCGCG-CGGCa -3'
miRNA:   3'- cCUCGUCGA---------------CCGCGgaGCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 41314 0.67 0.560054
Target:  5'- -aGGCAGCUcGCGCggCGCAaaguccagcggggacUCGGCCg -3'
miRNA:   3'- ccUCGUCGAcCGCGgaGCGU---------------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 101636 0.67 0.556178
Target:  5'- --cGCGGC-GGCGCCcgccgccgccCGCGCCGccGCCg -3'
miRNA:   3'- ccuCGUCGaCCGCGGa---------GCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 1968 0.67 0.556178
Target:  5'- aGGGCAGCccGCGCC-CGCGCaGGUa -3'
miRNA:   3'- cCUCGUCGacCGCGGaGCGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 120836 0.67 0.556178
Target:  5'- cGAGCAGCgggagcGGgGCCgCGaCGCCGGa- -3'
miRNA:   3'- cCUCGUCGa-----CCgCGGaGC-GUGGCCgg -5'
6350 5' -62.5 NC_001847.1 + 76536 0.67 0.556178
Target:  5'- cGGGCGcGCUGGCcagcguguuacuGCCcaCGCAgCCGGCg -3'
miRNA:   3'- cCUCGU-CGACCG------------CGGa-GCGU-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 18993 0.67 0.556178
Target:  5'- --cGCGGCcgccaGCGCCUCGgGCCGcGCg -3'
miRNA:   3'- ccuCGUCGac---CGCGGAGCgUGGC-CGg -5'
6350 5' -62.5 NC_001847.1 + 2209 0.67 0.556178
Target:  5'- cGGGGCGGCaguaGGcCGCCa-GCGCCgcGGCg -3'
miRNA:   3'- -CCUCGUCGa---CC-GCGGagCGUGG--CCGg -5'
6350 5' -62.5 NC_001847.1 + 115494 0.67 0.556178
Target:  5'- -cGGCGGCcGG-GCC-CGCAagCGGCCg -3'
miRNA:   3'- ccUCGUCGaCCgCGGaGCGUg-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 74394 0.67 0.556178
Target:  5'- gGGGGaCcGCgcGGcCGCCgcgcgCGCGCgGGCCg -3'
miRNA:   3'- -CCUC-GuCGa-CC-GCGGa----GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 41509 0.67 0.556178
Target:  5'- cGAGCGuGCagacguccGCGgC-CGCGCCGGCCg -3'
miRNA:   3'- cCUCGU-CGac------CGCgGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105022 0.67 0.556178
Target:  5'- cGGGGCGGCaguaGGcCGCCa-GCGCCgcGGCg -3'
miRNA:   3'- -CCUCGUCGa---CC-GCGGagCGUGG--CCGg -5'
6350 5' -62.5 NC_001847.1 + 92110 0.67 0.556178
Target:  5'- aGGAGUAGUUGGaGUagCGCACCuuuucggcGGCCc -3'
miRNA:   3'- -CCUCGUCGACCgCGgaGCGUGG--------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 48508 0.67 0.556178
Target:  5'- cGGGGCGGCgcGGCccgcccacacGCUUaCGCGgCgCGGCCa -3'
miRNA:   3'- -CCUCGUCGa-CCG----------CGGA-GCGU-G-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 52966 0.67 0.556178
Target:  5'- aGGAGCAuCUccgagGGcCGCgUCGCGCaguGGCCc -3'
miRNA:   3'- -CCUCGUcGA-----CC-GCGgAGCGUGg--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.