miRNA display CGI


Results 101 - 120 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 14103 0.69 0.426707
Target:  5'- aGGAucgacGcCAGUUGGCGCCggaaGCGagcgggcgugucuCCGGCCg -3'
miRNA:   3'- -CCU-----C-GUCGACCGCGGag--CGU-------------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14191 0.74 0.200642
Target:  5'- gGGAGgGGCUGGCGgCgggGCuggcggucagGCCGGCCg -3'
miRNA:   3'- -CCUCgUCGACCGCgGag-CG----------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14332 0.66 0.563936
Target:  5'- cGAGCGGCgggcagagaaggGGUGCCugcugccgacgcUCGCAgaugccaCGGCCg -3'
miRNA:   3'- cCUCGUCGa-----------CCGCGG------------AGCGUg------GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14428 0.74 0.205498
Target:  5'- cGGGGCuccGCuguuUGGCGCCgagCGCG-CGGCCg -3'
miRNA:   3'- -CCUCGu--CG----ACCGCGGa--GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14814 0.73 0.248096
Target:  5'- cGGAGCuGCgcGGCGCCcUGCGCgCGGUg -3'
miRNA:   3'- -CCUCGuCGa-CCGCGGaGCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 14940 0.71 0.332506
Target:  5'- aGGcuGCgAGCgGGCGCCgcUCGCG-CGGCCa -3'
miRNA:   3'- -CCu-CG-UCGaCCGCGG--AGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 15197 0.69 0.436186
Target:  5'- uGGGCAGC-GGa-CC-CGCACCGcGCCg -3'
miRNA:   3'- cCUCGUCGaCCgcGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 15383 0.67 0.517911
Target:  5'- cGGGGCGGUcGGCGUCg-GgGCUggGGCCg -3'
miRNA:   3'- -CCUCGUCGaCCGCGGagCgUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 15434 0.66 0.574648
Target:  5'- cGAGCugguuuaAGCUGGCGCUgcugaaaagCGUGgCGGCg -3'
miRNA:   3'- cCUCG-------UCGACCGCGGa--------GCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 15537 0.87 0.026505
Target:  5'- cGGGCuGCUGGCGCCggugCGCGCgCGGCCg -3'
miRNA:   3'- cCUCGuCGACCGCGGa---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 16058 0.66 0.59522
Target:  5'- -cGGCGGCcgcGGCGCCUC-UGCUGGgCg -3'
miRNA:   3'- ccUCGUCGa--CCGCGGAGcGUGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 16351 0.67 0.508504
Target:  5'- cGAGCAGC--GCGCC-CaGCA-CGGCCa -3'
miRNA:   3'- cCUCGUCGacCGCGGaG-CGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 16591 0.72 0.297076
Target:  5'- cGGGGCGGCguggGGUGCCggCgaucagacgcugaGCAUCGGCUc -3'
miRNA:   3'- -CCUCGUCGa---CCGCGGa-G-------------CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 16662 0.72 0.265863
Target:  5'- -uGGCGGCgcgGGCGCgUCGCGCa-GCCu -3'
miRNA:   3'- ccUCGUCGa--CCGCGgAGCGUGgcCGG- -5'
6350 5' -62.5 NC_001847.1 + 16716 0.66 0.585407
Target:  5'- aGGAGCcccacGGCGCCgagacCGCAggcgaCGGCCa -3'
miRNA:   3'- -CCUCGucga-CCGCGGa----GCGUg----GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 16918 0.66 0.59522
Target:  5'- cGGGCcGCUcGGCGCa--GaCGCCGGUCu -3'
miRNA:   3'- cCUCGuCGA-CCGCGgagC-GUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 17006 0.78 0.110935
Target:  5'- gGGAcGCAGC--GCGCCUCGCAgaCGGCCu -3'
miRNA:   3'- -CCU-CGUCGacCGCGGAGCGUg-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 17334 0.74 0.210455
Target:  5'- --cGUAGCcGGCGCCUUcuaGCGCUGGCUg -3'
miRNA:   3'- ccuCGUCGaCCGCGGAG---CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 18008 0.7 0.37016
Target:  5'- cGGGGCuguugGGCguggGGgGCgUUGCGCCGGUg -3'
miRNA:   3'- -CCUCG-----UCGa---CCgCGgAGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 18332 0.72 0.289177
Target:  5'- cGGAGCAGCUgccgGGCGCagUCGCGgucgcccaagaucgUCGGCg -3'
miRNA:   3'- -CCUCGUCGA----CCGCGg-AGCGU--------------GGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.