miRNA display CGI


Results 121 - 140 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 18511 0.69 0.427563
Target:  5'- -cAGCAGCucUGGCGagUUCGUcuccaggguGCCGGCCa -3'
miRNA:   3'- ccUCGUCG--ACCGCg-GAGCG---------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 18882 0.66 0.589329
Target:  5'- cGAGCGGCgccagaguccgcaGCGCCgCGUACC-GCCa -3'
miRNA:   3'- cCUCGUCGac-----------CGCGGaGCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 18993 0.67 0.556178
Target:  5'- --cGCGGCcgccaGCGCCUCGgGCCGcGCg -3'
miRNA:   3'- ccuCGUCGac---CGCGGAGCgUGGC-CGg -5'
6350 5' -62.5 NC_001847.1 + 19220 0.7 0.37016
Target:  5'- cGAGUgccGCUGcgacagccaGCGCCUgCGCgaGCCGGCCa -3'
miRNA:   3'- cCUCGu--CGAC---------CGCGGA-GCG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 19430 0.68 0.453727
Target:  5'- gGGAGCgccaaaGGCcGcGCGCC-CGCuGCCgGGCCa -3'
miRNA:   3'- -CCUCG------UCGaC-CGCGGaGCG-UGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 19629 0.72 0.265863
Target:  5'- cGGGGC-GCcGGCGUCg-GCGCgCGGCCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGagCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 19709 0.68 0.453727
Target:  5'- cGAGCAGagccgGGCGCUgacgGCaaGCCGGCUg -3'
miRNA:   3'- cCUCGUCga---CCGCGGag--CG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 20068 0.78 0.108161
Target:  5'- gGGAGCGGCgUGGCGgCUCccgcggcgcgGC-CCGGCCa -3'
miRNA:   3'- -CCUCGUCG-ACCGCgGAG----------CGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 21367 0.67 0.546526
Target:  5'- -cGGCGGCUcgGGcCGCCUCGgG-CGGCUc -3'
miRNA:   3'- ccUCGUCGA--CC-GCGGAGCgUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 21396 0.67 0.536927
Target:  5'- aGGAGgGGauucgGGCcgGCCgaggauUCGgGCCGGCCg -3'
miRNA:   3'- -CCUCgUCga---CCG--CGG------AGCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 21706 0.7 0.389241
Target:  5'- aGGAGCcggaggaccagcgccAGCagGGCGCgggccgGCGCCGGCCc -3'
miRNA:   3'- -CCUCG---------------UCGa-CCGCGgag---CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 21763 0.8 0.0756
Target:  5'- gGGGGCcGCcGGCGCCgggcccgGCGCCGGCCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGag-----CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 21962 0.68 0.471644
Target:  5'- cGGGC-GCUGG-GCCgcgGCGCCGGUUg -3'
miRNA:   3'- cCUCGuCGACCgCGGag-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 22053 0.7 0.378032
Target:  5'- uGGAGUcGCUGcCGCUcacgUCGCACuCGGCUc -3'
miRNA:   3'- -CCUCGuCGACcGCGG----AGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 22085 0.66 0.585407
Target:  5'- --cGCAGacguGCGCCgacgCGCugCGGCUg -3'
miRNA:   3'- ccuCGUCgac-CGCGGa---GCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 22146 0.69 0.419042
Target:  5'- cGGcGGCGGCgcgcaaaagccGGCGCagCGgGCCGGCCu -3'
miRNA:   3'- -CC-UCGUCGa----------CCGCGgaGCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 22266 0.68 0.453727
Target:  5'- cGAGCGcGC-GGCGCagcgCGCGCguguCGGCCg -3'
miRNA:   3'- cCUCGU-CGaCCGCGga--GCGUG----GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 22383 0.72 0.27201
Target:  5'- cGGGGCAGaaGGCGCC-CGgGCCgcGGCg -3'
miRNA:   3'- -CCUCGUCgaCCGCGGaGCgUGG--CCGg -5'
6350 5' -62.5 NC_001847.1 + 22488 0.66 0.592273
Target:  5'- uGGGGCaaGGCUGGCcguggcucauggcgGCggCGgGCCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGACCG--------------CGgaGCgUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 22569 0.71 0.329618
Target:  5'- aGGAGCGGUaagcgGGCGCCccggggcagggccCGC-CCGGUCg -3'
miRNA:   3'- -CCUCGUCGa----CCGCGGa------------GCGuGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.