miRNA display CGI


Results 141 - 160 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 23227 0.67 0.505696
Target:  5'- aGGuGCAGUcgaGGCGCgguuccuggaggugCUCGUcgaGCCGGCUg -3'
miRNA:   3'- -CCuCGUCGa--CCGCG--------------GAGCG---UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 23787 0.67 0.536927
Target:  5'- cGGGC-GCgaGGuCGCCcagCGCGgCGGCCa -3'
miRNA:   3'- cCUCGuCGa-CC-GCGGa--GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 23984 0.69 0.419042
Target:  5'- uGGGcCGGCuUGGCGCCagucccagaauUCGCACUcgGGCUa -3'
miRNA:   3'- cCUC-GUCG-ACCGCGG-----------AGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 24097 0.74 0.200642
Target:  5'- uGAG-AGCUGGCGCgggucccagggCUCGCACUcgGGCCa -3'
miRNA:   3'- cCUCgUCGACCGCG-----------GAGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 24232 0.69 0.394111
Target:  5'- cGGGGCcacgugGGUcGGCGCCUCGCcgugguggACaGGCCc -3'
miRNA:   3'- -CCUCG------UCGaCCGCGGAGCG--------UGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 24327 0.73 0.236805
Target:  5'- cGAGCGGUgGcGCGCCacgcCGCGCgCGGCCu -3'
miRNA:   3'- cCUCGUCGaC-CGCGGa---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 24942 0.74 0.210455
Target:  5'- -cAGCAGCUgGGCGgCUUGC-CCGGCa -3'
miRNA:   3'- ccUCGUCGA-CCGCgGAGCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 25185 0.82 0.063067
Target:  5'- aGGuAGCAGCUGGCcagcgaGCCcCGCGCgCGGCCg -3'
miRNA:   3'- -CC-UCGUCGACCG------CGGaGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 25525 0.74 0.195887
Target:  5'- aGGcGCGGUUGGCGC---GCACCGGCUc -3'
miRNA:   3'- -CCuCGUCGACCGCGgagCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 25783 0.7 0.386016
Target:  5'- aGAaCAGgUcGCGcCCUCGCACCGGCg -3'
miRNA:   3'- cCUcGUCgAcCGC-GGAGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 26487 0.69 0.436186
Target:  5'- aGGGGCGGgcCUGGUGCaaggCGgGCCuGCCg -3'
miRNA:   3'- -CCUCGUC--GACCGCGga--GCgUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 27425 0.67 0.546526
Target:  5'- cGGcGCGGUcGGUGUCguUCGCAgCGGCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGG--AGCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 27685 0.66 0.614916
Target:  5'- cGAGCuGCcuuuauaGCGCCggCGCACgCGGCg -3'
miRNA:   3'- cCUCGuCGac-----CGCGGa-GCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 27705 0.7 0.37016
Target:  5'- cGAGCgccGGCgGGcCGCC-CGCGCCGaGCUg -3'
miRNA:   3'- cCUCG---UCGaCC-GCGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 27773 0.7 0.354754
Target:  5'- aGAGCAGCgaggacgacGGCGCCggagaCGCGggGGCCa -3'
miRNA:   3'- cCUCGUCGa--------CCGCGGa----GCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 27882 0.71 0.318252
Target:  5'- cGAGCGGUUGGauggcgagguCGCCg-GC-CCGGCCg -3'
miRNA:   3'- cCUCGUCGACC----------GCGGagCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 28095 0.68 0.471644
Target:  5'- gGGGGCGGC-GGUGcCCUCGgGgCCaggaccgaGGCCg -3'
miRNA:   3'- -CCUCGUCGaCCGC-GGAGCgU-GG--------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 28189 0.7 0.386016
Target:  5'- -uGGCGGCcGcGCGCCUgCGCGCCacggcggcguucGGCCc -3'
miRNA:   3'- ccUCGUCGaC-CGCGGA-GCGUGG------------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 28317 0.68 0.444908
Target:  5'- cGAGaGGCgGGCGCCggGC-CCGGCg -3'
miRNA:   3'- cCUCgUCGaCCGCGGagCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 28347 0.66 0.579533
Target:  5'- cGGGGCcGCgcgcccgggcccccGGCGcCCUCGCcGCCGGagaCg -3'
miRNA:   3'- -CCUCGuCGa-------------CCGC-GGAGCG-UGGCCg--G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.