miRNA display CGI


Results 161 - 180 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 28418 0.74 0.210455
Target:  5'- cGGGCGcGCaaccGGCGCC-CGCGCUGGCUa -3'
miRNA:   3'- cCUCGU-CGa---CCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 28448 0.66 0.59522
Target:  5'- --cGCcGC-GGCGCCgCGCgACgGGCCg -3'
miRNA:   3'- ccuCGuCGaCCGCGGaGCG-UGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 28520 0.7 0.386016
Target:  5'- -cGGCAGC--GCGCCgccgcCGC-CCGGCCg -3'
miRNA:   3'- ccUCGUCGacCGCGGa----GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 28609 0.71 0.332506
Target:  5'- -aGGCGGCcGcGCGCUaCGCGgCGGCCg -3'
miRNA:   3'- ccUCGUCGaC-CGCGGaGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 28762 0.74 0.205498
Target:  5'- cGGAccuGCAGCUGGCgcGCCUgcUGCAgCGGCg -3'
miRNA:   3'- -CCU---CGUCGACCG--CGGA--GCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 28833 0.7 0.386016
Target:  5'- gGGAGC-GUgacGGCGCCgcugC-CGCCGGUCg -3'
miRNA:   3'- -CCUCGuCGa--CCGCGGa---GcGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 28834 0.66 0.599153
Target:  5'- uGGuGCGGCUGcuagaacgcgcggccGCGCgCgCGaCGCCGGCg -3'
miRNA:   3'- -CCuCGUCGAC---------------CGCG-GaGC-GUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 29002 0.72 0.27201
Target:  5'- aGAGCGcgccguGCUGGCGCagcuaUCGCGCCcagaGCCg -3'
miRNA:   3'- cCUCGU------CGACCGCGg----AGCGUGGc---CGG- -5'
6350 5' -62.5 NC_001847.1 + 29017 0.78 0.119659
Target:  5'- cGGcGGCAGC-GGCGCC-CGCGCCGcGCUc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 29044 0.71 0.325321
Target:  5'- --cGCcgAGCUGcGCGCCgugCuCGCCGGCCg -3'
miRNA:   3'- ccuCG--UCGAC-CGCGGa--GcGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 29074 0.68 0.46264
Target:  5'- --cGCGGCgccGGCGCCccUGcCGCCGGCg -3'
miRNA:   3'- ccuCGUCGa--CCGCGGa-GC-GUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 29122 0.66 0.614916
Target:  5'- cGAGCGGCUGcGCGagCUggcggaccgcUGCGCCGucGCCu -3'
miRNA:   3'- cCUCGUCGAC-CGCg-GA----------GCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 29251 0.71 0.325321
Target:  5'- --cGCGGcCUGcGCGCCggaCGCGCUGGCg -3'
miRNA:   3'- ccuCGUC-GAC-CGCGGa--GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 29348 0.68 0.450188
Target:  5'- cGGGCGGCcguugaaaacagcGGCGaCCgCGCGgCGGCCg -3'
miRNA:   3'- cCUCGUCGa------------CCGC-GGaGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 29359 0.67 0.517911
Target:  5'- --cGCGGCcccggcGGCGCUgCGCGCCgaggcGGCCg -3'
miRNA:   3'- ccuCGUCGa-----CCGCGGaGCGUGG-----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 29437 0.7 0.378032
Target:  5'- cGAGC-GCUGGgGCgUgGCGCCgcccgcGGCCg -3'
miRNA:   3'- cCUCGuCGACCgCGgAgCGUGG------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 29456 0.66 0.605059
Target:  5'- --cGCGGCgcGGCgGCCcgCGCGUCGGCCn -3'
miRNA:   3'- ccuCGUCGa-CCG-CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 29479 0.66 0.59522
Target:  5'- --cGCGGCcgaGGCGgCaCGCucuCCGGCCg -3'
miRNA:   3'- ccuCGUCGa--CCGCgGaGCGu--GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 29483 0.68 0.444908
Target:  5'- uGGGC-GCUGGCGCgCgCGCuguucagcccGCCGGCg -3'
miRNA:   3'- cCUCGuCGACCGCG-GaGCG----------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 29526 0.76 0.157367
Target:  5'- cGGcGCGGCUGGCGgC-CGCGCucgCGGCCc -3'
miRNA:   3'- -CCuCGUCGACCGCgGaGCGUG---GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.