miRNA display CGI


Results 81 - 100 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 124866 0.7 0.378032
Target:  5'- uGGAGUcGCUGcCGCUcacgUCGCACuCGGCUc -3'
miRNA:   3'- -CCUCGuCGACcGCGG----AGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124576 0.8 0.0756
Target:  5'- gGGGGCcGCcGGCGCCgggcccgGCGCCGGCCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGag-----CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124564 0.71 0.304462
Target:  5'- aGAGCAGCgcGGCGUCUgCGUACaGGUCu -3'
miRNA:   3'- cCUCGUCGa-CCGCGGA-GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124519 0.7 0.389241
Target:  5'- aGGAGCcggaggaccagcgccAGCagGGCGCgggccgGCGCCGGCCc -3'
miRNA:   3'- -CCUCG---------------UCGa-CCGCGgag---CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124269 0.71 0.339807
Target:  5'- -aGGCGGUcugccugGGCGCC-CGCGCCcGCCg -3'
miRNA:   3'- ccUCGUCGa------CCGCGGaGCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 124209 0.67 0.536927
Target:  5'- aGGAGgGGauucgGGCcgGCCgaggauUCGgGCCGGCCg -3'
miRNA:   3'- -CCUCgUCga---CCG--CGG------AGCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124156 0.68 0.444908
Target:  5'- gGGAGU-GCaGGCGCCaagagacuucgCGCGCCGucGCCa -3'
miRNA:   3'- -CCUCGuCGaCCGCGGa----------GCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 124072 0.66 0.605059
Target:  5'- cGGGGUggaacaGGCaGGUgaacuGCCgcCGCugCGGCCa -3'
miRNA:   3'- -CCUCG------UCGaCCG-----CGGa-GCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 123809 0.69 0.39902
Target:  5'- cGGcAGCGGCaGGCGCCguccuggCGUuggagguagugccCCGGCCc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGa------GCGu------------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 123806 0.67 0.508504
Target:  5'- cGAGUGcucccGCUccGGCGCCagcCGCccGCCGGCCu -3'
miRNA:   3'- cCUCGU-----CGA--CCGCGGa--GCG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 123764 0.66 0.59522
Target:  5'- -uAGCAGC-GGCccugaCUUGCAUUGGCCu -3'
miRNA:   3'- ccUCGUCGaCCGcg---GAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 123725 0.68 0.444908
Target:  5'- cGGcAGCAGC-GGCGgCg-GCAUCGGCg -3'
miRNA:   3'- -CC-UCGUCGaCCGCgGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 123698 0.69 0.419042
Target:  5'- cGGuAGCcGCUGGCGCggggUCGCA-CGGCa -3'
miRNA:   3'- -CC-UCGuCGACCGCGg---AGCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 123482 0.67 0.508504
Target:  5'- cGGGCucGGCUGGgGCCgcCGCAagcggGGCCg -3'
miRNA:   3'- cCUCG--UCGACCgCGGa-GCGUgg---CCGG- -5'
6350 5' -62.5 NC_001847.1 + 123038 0.68 0.46264
Target:  5'- gGGGGCcGCUGGaaguacgGCCgcggGCGCCGGaCCc -3'
miRNA:   3'- -CCUCGuCGACCg------CGGag--CGUGGCC-GG- -5'
6350 5' -62.5 NC_001847.1 + 122566 0.68 0.471644
Target:  5'- cGAGU-GCgagGGCGCCgCGUACgCGGCg -3'
miRNA:   3'- cCUCGuCGa--CCGCGGaGCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 122103 0.76 0.157367
Target:  5'- aGGAgacGCAGUUGGCGCUgacgcugcaggUCGCGaCGGCCg -3'
miRNA:   3'- -CCU---CGUCGACCGCGG-----------AGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 122015 0.77 0.135628
Target:  5'- cGGcaGGCGGCgcGGCGCCgcccgCGCGCCccGGCCg -3'
miRNA:   3'- -CC--UCGUCGa-CCGCGGa----GCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 121845 0.68 0.480736
Target:  5'- --uGCAGCccGGCGCCcgcguagcgcgCGCACagGGCCg -3'
miRNA:   3'- ccuCGUCGa-CCGCGGa----------GCGUGg-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 121796 0.71 0.332506
Target:  5'- uGGAGCGuccucGCgGGCGCCUgcucgcCGC-CCGuGCCg -3'
miRNA:   3'- -CCUCGU-----CGaCCGCGGA------GCGuGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.