miRNA display CGI


Results 101 - 120 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 121790 0.68 0.496385
Target:  5'- cGuGUAGCcgGGCGCCUCugagugccguaGCGCCagcagguacagcucGGCCg -3'
miRNA:   3'- cCuCGUCGa-CCGCGGAG-----------CGUGG--------------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 120987 0.69 0.427563
Target:  5'- --cGCGGCcgccccGGcCGCCgcugCGCAgCCGGCCg -3'
miRNA:   3'- ccuCGUCGa-----CC-GCGGa---GCGU-GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 120904 0.66 0.605059
Target:  5'- aGAGCgGGCUcGGCGUUUgcccucaccaCGCccccgGCCGGCCu -3'
miRNA:   3'- cCUCG-UCGA-CCGCGGA----------GCG-----UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 120836 0.67 0.556178
Target:  5'- cGAGCAGCgggagcGGgGCCgCGaCGCCGGa- -3'
miRNA:   3'- cCUCGUCGa-----CCgCGGaGC-GUGGCCgg -5'
6350 5' -62.5 NC_001847.1 + 120791 0.68 0.444908
Target:  5'- -uGGCGGCguuccccgcaGGCGCCgccaccaCGC-CCGGCCc -3'
miRNA:   3'- ccUCGUCGa---------CCGCGGa------GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 120743 0.68 0.489913
Target:  5'- --uGCgAGC-GGgGCCUCGCGCCaGCUc -3'
miRNA:   3'- ccuCG-UCGaCCgCGGAGCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 120697 0.67 0.536927
Target:  5'- cGAGCAGC--GCgGCCgCGCGCuCGGCg -3'
miRNA:   3'- cCUCGUCGacCG-CGGaGCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 120436 0.68 0.49917
Target:  5'- aGAGCaucacguucgucAGCU-GCGCCUgcuccaucgccgCGcCGCCGGCCg -3'
miRNA:   3'- cCUCG------------UCGAcCGCGGA------------GC-GUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 120157 0.68 0.480736
Target:  5'- aGGGGCgcuugccaAGCUuGCGCa--GCACCGuGCCa -3'
miRNA:   3'- -CCUCG--------UCGAcCGCGgagCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 120122 0.66 0.575624
Target:  5'- -cGGCGGCc-GCGgCUCGCG-CGGCCc -3'
miRNA:   3'- ccUCGUCGacCGCgGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 120092 0.68 0.471644
Target:  5'- cGGGGCGGgaGauaaaGCGCCcgCGCGUCGGCg -3'
miRNA:   3'- -CCUCGUCgaC-----CGCGGa-GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 119666 0.72 0.27201
Target:  5'- uGGAGUAGUaGcGCGUCUgCGCGCCGugcGCCg -3'
miRNA:   3'- -CCUCGUCGaC-CGCGGA-GCGUGGC---CGG- -5'
6350 5' -62.5 NC_001847.1 + 119577 0.73 0.236805
Target:  5'- cGGGCAGCggcGGCcgcggcccgacgGCCgcgcgCGCACCGGCg -3'
miRNA:   3'- cCUCGUCGa--CCG------------CGGa----GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 119520 0.69 0.410626
Target:  5'- cGGAGgGGC-GGCGgC-CGCGgCCGGCa -3'
miRNA:   3'- -CCUCgUCGaCCGCgGaGCGU-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 118783 0.69 0.402314
Target:  5'- uGAGCGGCaccGGCaGCCgccaGCGCCuccaGGCCg -3'
miRNA:   3'- cCUCGUCGa--CCG-CGGag--CGUGG----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 118443 0.74 0.220678
Target:  5'- uGGGGCuccuGCUGGUggcgGCCUCGUGCCugcggcgcaaGGCCc -3'
miRNA:   3'- -CCUCGu---CGACCG----CGGAGCGUGG----------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 118219 0.69 0.410626
Target:  5'- uGAGCAGaCcGGCGUCU-GCGCCgagcGGCCc -3'
miRNA:   3'- cCUCGUC-GaCCGCGGAgCGUGG----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 118056 0.68 0.49917
Target:  5'- uGGAGCGccGCUuuuacGCGgCUgGCacGCCGGCCg -3'
miRNA:   3'- -CCUCGU--CGAc----CGCgGAgCG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 117407 0.66 0.575624
Target:  5'- cGGuGCGcGCggUGGaCGCUUCGCG-CGGCUg -3'
miRNA:   3'- -CCuCGU-CG--ACC-GCGGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 117401 0.71 0.304462
Target:  5'- cGAGCgcgaGGCcgUGGcCGCCUCGUacGCCGaGCCg -3'
miRNA:   3'- cCUCG----UCG--ACC-GCGGAGCG--UGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.