miRNA display CGI


Results 121 - 140 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 117329 0.72 0.265863
Target:  5'- -uAGCGGCggggGGCgGCCUCGCcCCccgcGGCCg -3'
miRNA:   3'- ccUCGUCGa---CCG-CGGAGCGuGG----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 116822 0.69 0.427563
Target:  5'- -cGGCAGCUGcuccGCGUgaUUCGCcgGCUGGCCg -3'
miRNA:   3'- ccUCGUCGAC----CGCG--GAGCG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 116696 0.68 0.46264
Target:  5'- cGGGCgcggcaccgcacGGCUGGcCGCggCGCACgUGGCCa -3'
miRNA:   3'- cCUCG------------UCGACC-GCGgaGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 116691 0.68 0.49917
Target:  5'- uGGAGC-GCgGGCGUCgUCGCguacgagauGCUGGCa -3'
miRNA:   3'- -CCUCGuCGaCCGCGG-AGCG---------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 116659 0.67 0.527387
Target:  5'- cGGGCAcGCUGGUgGCCUgCGUguggguCCGGCg -3'
miRNA:   3'- cCUCGU-CGACCG-CGGA-GCGu-----GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 116648 0.7 0.354754
Target:  5'- aGAGCuGCUGGCGCgCgCGCGCUacgacuGCCg -3'
miRNA:   3'- cCUCGuCGACCGCG-GaGCGUGGc-----CGG- -5'
6350 5' -62.5 NC_001847.1 + 116620 0.7 0.378032
Target:  5'- cGGA-CGGCgGcGCGCCcgcaGCGCUGGCCu -3'
miRNA:   3'- -CCUcGUCGaC-CGCGGag--CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 116443 0.7 0.37016
Target:  5'- aGGGCGGUgGGCGCUggCGCACgcgCGGCg -3'
miRNA:   3'- cCUCGUCGaCCGCGGa-GCGUG---GCCGg -5'
6350 5' -62.5 NC_001847.1 + 116245 0.69 0.408955
Target:  5'- aGGAGCAcgugguGCUcaagaucGGgGCCUCGgccucuaCGCUGGCCg -3'
miRNA:   3'- -CCUCGU------CGA-------CCgCGGAGC-------GUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 116164 0.75 0.186671
Target:  5'- -uGGCGGCcgcgGGCGCCgcggcCGCGCUGGUCg -3'
miRNA:   3'- ccUCGUCGa---CCGCGGa----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 115797 0.71 0.311299
Target:  5'- cGGAGCcGCUGcggcuccgcGCGCUgCGCugCGGCg -3'
miRNA:   3'- -CCUCGuCGAC---------CGCGGaGCGugGCCGg -5'
6350 5' -62.5 NC_001847.1 + 115774 0.67 0.550381
Target:  5'- uGGcGGCGGCccuggccaccgucgGGCGCg-CGCAagacCCGGCCg -3'
miRNA:   3'- -CC-UCGUCGa-------------CCGCGgaGCGU----GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 115694 0.78 0.105453
Target:  5'- cGGAGCGGCUGGC-CCggcagcggGCGCgCGGCCu -3'
miRNA:   3'- -CCUCGUCGACCGcGGag------CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 115682 0.71 0.332506
Target:  5'- uGAGCGGCUGcGCgggggcgagaGCCg-GCugCGGCCc -3'
miRNA:   3'- cCUCGUCGAC-CG----------CGGagCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 115494 0.67 0.556178
Target:  5'- -cGGCGGCcGG-GCC-CGCAagCGGCCg -3'
miRNA:   3'- ccUCGUCGaCCgCGGaGCGUg-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 115283 0.7 0.378032
Target:  5'- cGGGCuaAGCcGGCGCCcccggGCGCgGGCCa -3'
miRNA:   3'- cCUCG--UCGaCCGCGGag---CGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 115050 0.71 0.332506
Target:  5'- cGGGGCagagcuccAGCUGGCG-CUCGCcCCGaGCg -3'
miRNA:   3'- -CCUCG--------UCGACCGCgGAGCGuGGC-CGg -5'
6350 5' -62.5 NC_001847.1 + 114504 0.72 0.291136
Target:  5'- uGAGCcccuUUGGCGCCUCGCugCGaaacGCCu -3'
miRNA:   3'- cCUCGuc--GACCGCGGAGCGugGC----CGG- -5'
6350 5' -62.5 NC_001847.1 + 114433 0.68 0.448424
Target:  5'- -cGGCGGCaacGGCaacccaaucgcgagcGCCUCGCuuAUCGGCCg -3'
miRNA:   3'- ccUCGUCGa--CCG---------------CGGAGCG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 113940 0.66 0.605059
Target:  5'- cGGucGCGGC-GGCGUCUCcuacgcCGCCGGgCg -3'
miRNA:   3'- -CCu-CGUCGaCCGCGGAGc-----GUGGCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.