miRNA display CGI


Results 141 - 160 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 113707 0.71 0.318252
Target:  5'- gGGAGCcggAGCuuUGGCcCgCUCGCucgGCCGGCCc -3'
miRNA:   3'- -CCUCG---UCG--ACCGcG-GAGCG---UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 113492 0.71 0.329618
Target:  5'- gGGGGCucgcccuccggucGCgcccgGGCGCggccCGCGCCGGCCa -3'
miRNA:   3'- -CCUCGu------------CGa----CCGCGga--GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 113359 0.69 0.419042
Target:  5'- cGGGGacccgcgccCGGCcGGCGCCgggcccgGCGCCGGCg -3'
miRNA:   3'- -CCUC---------GUCGaCCGCGGag-----CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 113173 0.66 0.59522
Target:  5'- cGGGCGGCaaccGGCGCCgcggcccagCGC-CCGGaCg -3'
miRNA:   3'- cCUCGUCGa---CCGCGGa--------GCGuGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 112978 0.68 0.46264
Target:  5'- cGAGCAgGCcGGC-CCgcuGCGCCGGCUu -3'
miRNA:   3'- cCUCGU-CGaCCGcGGag-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 111356 0.69 0.419042
Target:  5'- --cGCcGCgcugGGCGaCCUCGCGCCcgggcauccgcuGGCCa -3'
miRNA:   3'- ccuCGuCGa---CCGC-GGAGCGUGG------------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 111301 0.67 0.556178
Target:  5'- aGGccAGcCGGCUcGGgGCCgugcgCGCGCUGGaCCg -3'
miRNA:   3'- -CC--UC-GUCGA-CCgCGGa----GCGUGGCC-GG- -5'
6350 5' -62.5 NC_001847.1 + 111256 0.67 0.550381
Target:  5'- cGGAgGCGGCgccgggucggaggcGGCGCCgggccgggggCgGCGCuCGGCCg -3'
miRNA:   3'- -CCU-CGUCGa-------------CCGCGGa---------G-CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 111147 0.66 0.575624
Target:  5'- cGAGUgcgaauucugGGaCUGGCGCCaa--GCCGGCCc -3'
miRNA:   3'- cCUCG----------UC-GACCGCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 110944 0.72 0.278271
Target:  5'- cGGGGCgGGCgGGCcgacgaGCCUCGCggggcugcuugGCUGGCCu -3'
miRNA:   3'- -CCUCG-UCGaCCG------CGGAGCG-----------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 110243 0.71 0.318252
Target:  5'- gGGGGgGGggGGCGUaCUUGCAgCGGCCc -3'
miRNA:   3'- -CCUCgUCgaCCGCG-GAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 109669 0.69 0.410626
Target:  5'- gGGGGCGGCgcuugcuuUGGCccGCCUUGCGCUuuugcauuuGGCUc -3'
miRNA:   3'- -CCUCGUCG--------ACCG--CGGAGCGUGG---------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 109379 0.69 0.436186
Target:  5'- uGGGcGCAGCUGG-GCUgcgGUGCCGuGCCg -3'
miRNA:   3'- -CCU-CGUCGACCgCGGag-CGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 108764 0.7 0.37016
Target:  5'- --cGC-GCUgGGCGCCggaCGCGCCGGgCg -3'
miRNA:   3'- ccuCGuCGA-CCGCGGa--GCGUGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 108646 0.68 0.453727
Target:  5'- --cGCccGGCaGGCccGCCUUGCACCaGGCCc -3'
miRNA:   3'- ccuCG--UCGaCCG--CGGAGCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 108589 0.68 0.452841
Target:  5'- aGGAGCGGCUgucGGgGCUcauUUGCAUgaaagcaUGGCCg -3'
miRNA:   3'- -CCUCGUCGA---CCgCGG---AGCGUG-------GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 107789 0.8 0.085979
Target:  5'- gGGGGCAGCUGGgGCU--GCGgCGGCCg -3'
miRNA:   3'- -CCUCGUCGACCgCGGagCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 107701 0.66 0.585407
Target:  5'- --uGCGGUUGGCgGCgCUCGCggGCgGGCa -3'
miRNA:   3'- ccuCGUCGACCG-CG-GAGCG--UGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 107686 0.67 0.546526
Target:  5'- gGGGGCGGCgGGCagcggcaggGCCccCGCGCC-GCUg -3'
miRNA:   3'- -CCUCGUCGaCCG---------CGGa-GCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 107642 0.66 0.614916
Target:  5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3'
miRNA:   3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.