miRNA display CGI


Results 161 - 180 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 107443 0.69 0.436186
Target:  5'- cGGGCGGCccgccGGCGCUcgCGCGCCucaGCCc -3'
miRNA:   3'- cCUCGUCGa----CCGCGGa-GCGUGGc--CGG- -5'
6350 5' -62.5 NC_001847.1 + 107342 0.67 0.536927
Target:  5'- cGGGGC-GCgaaUGGCcagaGCC-CGCACCcGCCg -3'
miRNA:   3'- -CCUCGuCG---ACCG----CGGaGCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 107150 0.68 0.46264
Target:  5'- -cGGCcGC-GGcCGCCUcCGCcCCGGCCg -3'
miRNA:   3'- ccUCGuCGaCC-GCGGA-GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 106805 0.67 0.527387
Target:  5'- cGGGcgcGCGGCcccgcggGGCGCCggGC-CCGGCg -3'
miRNA:   3'- -CCU---CGUCGa------CCGCGGagCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 106730 0.72 0.278271
Target:  5'- cGGGCgccGGUUGcGCGCC-CGCGCUGGCg -3'
miRNA:   3'- cCUCG---UCGAC-CGCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 106672 0.68 0.489913
Target:  5'- -cAGCAGCgGGC-CCUCcagcgGCGgCGGCCc -3'
miRNA:   3'- ccUCGUCGaCCGcGGAG-----CGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 106669 0.69 0.436186
Target:  5'- --cGCGGCguccgcGGCGCgUCGUGCCacggcGGCCa -3'
miRNA:   3'- ccuCGUCGa-----CCGCGgAGCGUGG-----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 106626 0.69 0.410626
Target:  5'- cGGGCGGC-GGCGgCgCGCuGCCgGGCCa -3'
miRNA:   3'- cCUCGUCGaCCGCgGaGCG-UGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 106569 0.68 0.453727
Target:  5'- cGGGGCAGUcccagaGGC-CCUCGCGggugucgcCCGcGCCg -3'
miRNA:   3'- -CCUCGUCGa-----CCGcGGAGCGU--------GGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 106309 0.7 0.347223
Target:  5'- cGGcGGCAGC-GGCGCCgucaCGCucCCGGUg -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGa---GCGu-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 106285 0.69 0.402314
Target:  5'- -cAGCGccGCcGGCGUCgCGCGCgCGGCCg -3'
miRNA:   3'- ccUCGU--CGaCCGCGGaGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 106126 0.76 0.157367
Target:  5'- --cGCGGCgcgGGCGCCgcugccgccgGCGCCGGCCu -3'
miRNA:   3'- ccuCGUCGa--CCGCGGag--------CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 106076 0.76 0.161283
Target:  5'- aGGGGC-GCcGGCGCCgCGCGgCCGGCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGaGCGU-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 105953 0.74 0.205498
Target:  5'- gGGAGCccGGC-GGCGCCggcggCGCGgCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGaCCGCGGa----GCGU-GgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105866 0.71 0.339807
Target:  5'- cGGAGCAcGCgcuccggGuGCGCCgccagCGCGuCCGGCg -3'
miRNA:   3'- -CCUCGU-CGa------C-CGCGGa----GCGU-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 105799 0.68 0.47074
Target:  5'- cGGGGCcgcgcGCUGGaGCCgcgCGCGCUccaccgcgucgcgGGCCg -3'
miRNA:   3'- -CCUCGu----CGACCgCGGa--GCGUGG-------------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 105619 0.68 0.444908
Target:  5'- cGAGC-GC-GGcCGCCagcCGCGCCGGCa -3'
miRNA:   3'- cCUCGuCGaCC-GCGGa--GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 105569 0.77 0.129017
Target:  5'- cGGcGCGGC-GGCGCCg-GCGCCGGCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 105538 0.66 0.575624
Target:  5'- cGGcGGCGGCgaaguggGGCGCaaaggccggguCUCGCAagaCGGCa -3'
miRNA:   3'- -CC-UCGUCGa------CCGCG-----------GAGCGUg--GCCGg -5'
6350 5' -62.5 NC_001847.1 + 105148 0.79 0.102809
Target:  5'- cGGGCAGC-GGCGgCUcccgcCGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGaCCGCgGA-----GCGUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.