miRNA display CGI


Results 121 - 140 of 879 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 103950 0.77 0.132285
Target:  5'- -cAGCGGC-GGCGCCUCgGCGCgCGGCUc -3'
miRNA:   3'- ccUCGUCGaCCGCGGAG-CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 94143 0.76 0.153537
Target:  5'- gGGAGguGCUGGgCGacauCUCGCGgCGGCUg -3'
miRNA:   3'- -CCUCguCGACC-GCg---GAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 50597 0.71 0.304462
Target:  5'- uGGAGCGcuGCgacgcgGGCGCCUU-CGCCGGgCg -3'
miRNA:   3'- -CCUCGU--CGa-----CCGCGGAGcGUGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 134242 0.72 0.291136
Target:  5'- cGGGCGGCggccGGCGgC-CGCGgCGGCCc -3'
miRNA:   3'- cCUCGUCGa---CCGCgGaGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3416 0.72 0.291136
Target:  5'- aGAGCAGCccgggGGCGCCagGCGCa-GCCc -3'
miRNA:   3'- cCUCGUCGa----CCGCGGagCGUGgcCGG- -5'
6350 5' -62.5 NC_001847.1 + 74270 0.75 0.177839
Target:  5'- uGGGGCccGC-GcGCGCgCUCGCGCUGGCCu -3'
miRNA:   3'- -CCUCGu-CGaC-CGCG-GAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 12041 0.75 0.186671
Target:  5'- cGGAGC-GCUGGaCGCCcugCGCGCUgcggacgccgaGGCCg -3'
miRNA:   3'- -CCUCGuCGACC-GCGGa--GCGUGG-----------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 63419 0.74 0.195887
Target:  5'- gGGAGCGcacGC-GGCGCCggCGgGCCGGCg -3'
miRNA:   3'- -CCUCGU---CGaCCGCGGa-GCgUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 131575 0.74 0.205498
Target:  5'- cGGAccuGCAGCUGGCgcGCCUgcUGCAgCGGCg -3'
miRNA:   3'- -CCU---CGUCGACCG--CGGA--GCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 131231 0.74 0.210455
Target:  5'- cGGGCGcGCaaccGGCGCC-CGCGCUGGCUa -3'
miRNA:   3'- cCUCGU-CGa---CCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 57771 0.74 0.220678
Target:  5'- cGGGGCuGCUGGUG-CUCGC-CgGGCUg -3'
miRNA:   3'- -CCUCGuCGACCGCgGAGCGuGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 30989 0.74 0.222773
Target:  5'- uGGAGCAGCgaagcGGCaccauguccggcguuGCCggcgcgcgCGCGCCGGCa -3'
miRNA:   3'- -CCUCGUCGa----CCG---------------CGGa-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 35200 0.73 0.235149
Target:  5'- aGGAGCgcgcgcGGCUgGGCGCCcugCGCGCggacgugcugcaggCGGCCg -3'
miRNA:   3'- -CCUCG------UCGA-CCGCGGa--GCGUG--------------GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 24327 0.73 0.236805
Target:  5'- cGAGCGGUgGcGCGCCacgcCGCGCgCGGCCu -3'
miRNA:   3'- cCUCGUCGaC-CGCGGa---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 93744 0.73 0.250407
Target:  5'- -cGGCAGCUGGagGCCgCGCGgcugccggcggcggcCCGGCCg -3'
miRNA:   3'- ccUCGUCGACCg-CGGaGCGU---------------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 75922 0.73 0.253906
Target:  5'- cGAGCAcGCggUGGCGCCgccgUGCGCC-GCCa -3'
miRNA:   3'- cCUCGU-CG--ACCGCGGa---GCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 19629 0.72 0.265863
Target:  5'- cGGGGC-GCcGGCGUCg-GCGCgCGGCCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGagCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 70700 0.72 0.27201
Target:  5'- cGGGGCuGGCcgUGGcCGCCgacuacgaCGCGCCGGCa -3'
miRNA:   3'- -CCUCG-UCG--ACC-GCGGa-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 59360 0.72 0.278271
Target:  5'- cGGAGCGGC-GGCGgCagCgGCGgCGGCCg -3'
miRNA:   3'- -CCUCGUCGaCCGCgGa-G-CGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 53827 0.72 0.284646
Target:  5'- cGGGcGCGGCUGGCGgCg-GCAgCGGCg -3'
miRNA:   3'- -CCU-CGUCGACCGCgGagCGUgGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.