miRNA display CGI


Results 141 - 160 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 18008 0.7 0.37016
Target:  5'- cGGGGCuguugGGCguggGGgGCgUUGCGCCGGUg -3'
miRNA:   3'- -CCUCG-----UCGa---CCgCGgAGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 130586 0.7 0.354754
Target:  5'- aGAGCAGCgaggacgacGGCGCCggagaCGCGggGGCCa -3'
miRNA:   3'- cCUCGUCGa--------CCGCGGa----GCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 88074 0.71 0.304462
Target:  5'- uGGAcuuGGCUGGCaUCgacCGCGCCGGCCg -3'
miRNA:   3'- -CCUcg-UCGACCGcGGa--GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 92712 0.71 0.304462
Target:  5'- -aAGCAGCUGGCagaGCCUCGCGugcUCGcGCa -3'
miRNA:   3'- ccUCGUCGACCG---CGGAGCGU---GGC-CGg -5'
6350 5' -62.5 NC_001847.1 + 43784 0.72 0.290482
Target:  5'- --cGguGCUGgacgcgcGCGCCggCGCGCCGGUCg -3'
miRNA:   3'- ccuCguCGAC-------CGCGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 53827 0.72 0.284646
Target:  5'- cGGGcGCGGCUGGCGgCg-GCAgCGGCg -3'
miRNA:   3'- -CCU-CGUCGACCGCgGagCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 106730 0.72 0.278271
Target:  5'- cGGGCgccGGUUGcGCGCC-CGCGCUGGCg -3'
miRNA:   3'- cCUCG---UCGAC-CGCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 70700 0.72 0.27201
Target:  5'- cGGGGCuGGCcgUGGcCGCCgacuacgaCGCGCCGGCa -3'
miRNA:   3'- -CCUCG-UCG--ACC-GCGGa-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 134847 0.72 0.259828
Target:  5'- cGGGGC-GCggggacGGCGCC-CGCGCgGGCUc -3'
miRNA:   3'- -CCUCGuCGa-----CCGCGGaGCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 63540 0.73 0.253906
Target:  5'- --cGCuGCUGGCGCCgccUGgGCCGGCg -3'
miRNA:   3'- ccuCGuCGACCGCGGa--GCgUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 59176 0.71 0.311299
Target:  5'- gGGGGCGGCggucgagGGgGCCgUCGUAgcCCGaGCCg -3'
miRNA:   3'- -CCUCGUCGa------CCgCGG-AGCGU--GGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 27882 0.71 0.318252
Target:  5'- cGAGCGGUUGGauggcgagguCGCCg-GC-CCGGCCg -3'
miRNA:   3'- cCUCGUCGACC----------GCGGagCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 106309 0.7 0.347223
Target:  5'- cGGcGGCAGC-GGCGCCgucaCGCucCCGGUg -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGa---GCGu-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 61943 0.71 0.339807
Target:  5'- -cAGCGGC-GGCGCggccCGCGCgGGCCg -3'
miRNA:   3'- ccUCGUCGaCCGCGga--GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 36552 0.71 0.339807
Target:  5'- cGGAGauugacgcGCUGGCGCCgCGCGCCuaccuggacGCCg -3'
miRNA:   3'- -CCUCgu------CGACCGCGGaGCGUGGc--------CGG- -5'
6350 5' -62.5 NC_001847.1 + 121796 0.71 0.332506
Target:  5'- uGGAGCGuccucGCgGGCGCCUgcucgcCGC-CCGuGCCg -3'
miRNA:   3'- -CCUCGU-----CGaCCGCGGA------GCGuGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 125382 0.71 0.329618
Target:  5'- aGGAGCGGUaagcgGGCGCCccggggcagggccCGC-CCGGUCg -3'
miRNA:   3'- -CCUCGUCGa----CCGCGGa------------GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 90187 0.71 0.325321
Target:  5'- cGGGGCuGCUGcggcGCGCCgUCGC-CCaGCCc -3'
miRNA:   3'- -CCUCGuCGAC----CGCGG-AGCGuGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 87691 0.71 0.318252
Target:  5'- uGGGGCuGCUgcGGCGCCgcgGCGgCGGCg -3'
miRNA:   3'- -CCUCGuCGA--CCGCGGag-CGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 113707 0.71 0.318252
Target:  5'- gGGAGCcggAGCuuUGGCcCgCUCGCucgGCCGGCCc -3'
miRNA:   3'- -CCUCG---UCG--ACCGcG-GAGCG---UGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.