miRNA display CGI


Results 161 - 180 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 116648 0.7 0.354754
Target:  5'- aGAGCuGCUGGCGCgCgCGCGCUacgacuGCCg -3'
miRNA:   3'- cCUCGuCGACCGCG-GaGCGUGGc-----CGG- -5'
6350 5' -62.5 NC_001847.1 + 88309 0.7 0.353996
Target:  5'- gGGGGCGGUcgacuuuUGcGCGCUUuagcCGCGCgGGCCu -3'
miRNA:   3'- -CCUCGUCG-------AC-CGCGGA----GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 61943 0.71 0.339807
Target:  5'- -cAGCGGC-GGCGCggccCGCGCgGGCCg -3'
miRNA:   3'- ccUCGUCGaCCGCGga--GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 59069 0.71 0.339807
Target:  5'- cGGcAGCucGGCUGGCGCgccCUCGC-CCGGgUa -3'
miRNA:   3'- -CC-UCG--UCGACCGCG---GAGCGuGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 36882 0.71 0.332506
Target:  5'- cGGGGCuGCUGGCGaCUaCGCugCcccGCCg -3'
miRNA:   3'- -CCUCGuCGACCGCgGA-GCGugGc--CGG- -5'
6350 5' -62.5 NC_001847.1 + 94056 0.71 0.331782
Target:  5'- aGGcGCAGCUGG-GCCg-GCACCaguacguuugcgcGGCCa -3'
miRNA:   3'- -CCuCGUCGACCgCGGagCGUGG-------------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 133649 0.71 0.325321
Target:  5'- --cGCGGCUcuaccccgaGGCGCCgcCGCugCGGCUc -3'
miRNA:   3'- ccuCGUCGA---------CCGCGGa-GCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 132064 0.71 0.325321
Target:  5'- --cGCGGcCUGcGCGCCggaCGCGCUGGCg -3'
miRNA:   3'- ccuCGUC-GAC-CGCGGa--GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 94176 0.71 0.318252
Target:  5'- uGGGC-GC-GGcCGCCUCGCGCgGGCa -3'
miRNA:   3'- cCUCGuCGaCC-GCGGAGCGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 78118 0.7 0.37016
Target:  5'- uGGA-C-GCgGGCGCCaaaagcgggcgCGCGCCGGCCu -3'
miRNA:   3'- -CCUcGuCGaCCGCGGa----------GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 19220 0.7 0.37016
Target:  5'- cGAGUgccGCUGcgacagccaGCGCCUgCGCgaGCCGGCCa -3'
miRNA:   3'- cCUCGu--CGAC---------CGCGGA-GCG--UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8226 0.79 0.095246
Target:  5'- -aAGCAGCU-GCGCCaCGCGCUGGCCu -3'
miRNA:   3'- ccUCGUCGAcCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 107789 0.8 0.085979
Target:  5'- gGGGGCAGCUGGgGCU--GCGgCGGCCg -3'
miRNA:   3'- -CCUCGUCGACCgCGGagCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 59821 0.81 0.06996
Target:  5'- aGAGCAGCguuugcgccaGCGCCUCGCggggcACCGGCCa -3'
miRNA:   3'- cCUCGUCGac--------CGCGGAGCG-----UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 103691 0.7 0.386016
Target:  5'- --cGCGGC-GGCgGCC-CGCGCCggGGCCg -3'
miRNA:   3'- ccuCGUCGaCCG-CGGaGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 131646 0.7 0.386016
Target:  5'- gGGAGC-GUgacGGCGCCgcugC-CGCCGGUCg -3'
miRNA:   3'- -CCUCGuCGa--CCGCGGa---GcGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 28189 0.7 0.386016
Target:  5'- -uGGCGGCcGcGCGCCUgCGCGCCacggcggcguucGGCCc -3'
miRNA:   3'- ccUCGUCGaC-CGCGGA-GCGUGG------------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 71623 0.7 0.378032
Target:  5'- uGAcCAGCuacUGGCGCaaCUCGCGCUGcGCCg -3'
miRNA:   3'- cCUcGUCG---ACCGCG--GAGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 64054 0.7 0.378032
Target:  5'- uGGGC-GCUGGaCGCCcUG-GCCGGCCg -3'
miRNA:   3'- cCUCGuCGACC-GCGGaGCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 48367 0.7 0.378032
Target:  5'- -cAGCAGCgucacgaccgUGGCGCCgcCGgGCCgGGCCu -3'
miRNA:   3'- ccUCGUCG----------ACCGCGGa-GCgUGG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.