miRNA display CGI


Results 141 - 160 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 57670 0.66 0.575624
Target:  5'- cGGGCcgGGCcgGGCGCC-CgGCGCCcGCCc -3'
miRNA:   3'- cCUCG--UCGa-CCGCGGaG-CGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 83911 0.66 0.575624
Target:  5'- -uGGCacuGGCUGaGCGCuagauCUUGCACCacGGCCa -3'
miRNA:   3'- ccUCG---UCGAC-CGCG-----GAGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 62502 0.66 0.585407
Target:  5'- -uAGUAGUUGGCGCCcacaaagugCgGCACgGGCg -3'
miRNA:   3'- ccUCGUCGACCGCGGa--------G-CGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 107701 0.66 0.585407
Target:  5'- --uGCGGUUGGCgGCgCUCGCggGCgGGCa -3'
miRNA:   3'- ccuCGUCGACCG-CG-GAGCG--UGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 128121 0.66 0.585407
Target:  5'- -uGGC-GCUGGCGCUggcggaUGCG-CGGCCg -3'
miRNA:   3'- ccUCGuCGACCGCGGa-----GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 2293 0.66 0.585407
Target:  5'- -cGGCGGCggGGcCGCCgggCgGCAUgGGCCc -3'
miRNA:   3'- ccUCGUCGa-CC-GCGGa--G-CGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 69388 0.66 0.585407
Target:  5'- --cGCAGCUuGCGCC-CGCG--GGCCa -3'
miRNA:   3'- ccuCGUCGAcCGCGGaGCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 87348 0.66 0.585407
Target:  5'- uGGAGCcgaucGCgGGCGCCgaggcCGaCGCgUGGCCc -3'
miRNA:   3'- -CCUCGu----CGaCCGCGGa----GC-GUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 100350 0.66 0.585407
Target:  5'- -cAGCGGCcgcgGGUcguaGCCgCGCGCCgcGGCCg -3'
miRNA:   3'- ccUCGUCGa---CCG----CGGaGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 22488 0.66 0.592273
Target:  5'- uGGGGCaaGGCUGGCcguggcucauggcgGCggCGgGCCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGACCG--------------CGgaGCgUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 59545 0.66 0.585407
Target:  5'- -cGGCAGCUGGCuggugcuggGCCUggaGCacuuuuuuuuGCCGGCg -3'
miRNA:   3'- ccUCGUCGACCG---------CGGAg--CG----------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 44718 0.66 0.585407
Target:  5'- aGGGUAGCgggaagGGCGCCgccUCGUgGCCcGCCa -3'
miRNA:   3'- cCUCGUCGa-----CCGCGG---AGCG-UGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 120122 0.66 0.575624
Target:  5'- -cGGCGGCc-GCGgCUCGCG-CGGCCc -3'
miRNA:   3'- ccUCGUCGacCGCgGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 32988 0.66 0.575624
Target:  5'- cGGGGCGGgCagGGCGgC-CGgAgCGGCCg -3'
miRNA:   3'- -CCUCGUC-Ga-CCGCgGaGCgUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 58037 0.66 0.575624
Target:  5'- -aAGCAGCcc-CGCCgcuaccgCGCGCgGGCCg -3'
miRNA:   3'- ccUCGUCGaccGCGGa------GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 72976 0.66 0.575624
Target:  5'- gGGAcGCGGac-GCGCCcgCGCgggaGCUGGCCg -3'
miRNA:   3'- -CCU-CGUCgacCGCGGa-GCG----UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105538 0.66 0.575624
Target:  5'- cGGcGGCGGCgaaguggGGCGCaaaggccggguCUCGCAagaCGGCa -3'
miRNA:   3'- -CC-UCGUCGa------CCGCG-----------GAGCGUg--GCCGg -5'
6350 5' -62.5 NC_001847.1 + 28347 0.66 0.579533
Target:  5'- cGGGGCcGCgcgcccgggcccccGGCGcCCUCGCcGCCGGagaCg -3'
miRNA:   3'- -CCUCGuCGa-------------CCGC-GGAGCG-UGGCCg--G- -5'
6350 5' -62.5 NC_001847.1 + 54691 0.66 0.579533
Target:  5'- cGGcGGCGGC-GGCGCCcgcggggaggacgaCGCGCgGGUCc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGa-------------GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 72060 0.66 0.584427
Target:  5'- -cGGCGGUUGGCGCgcagaagCUgCGC-CCGcGCCu -3'
miRNA:   3'- ccUCGUCGACCGCG-------GA-GCGuGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.