Results 21 - 40 of 879 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 5' | -62.5 | NC_001847.1 | + | 97550 | 0.66 | 0.605059 |
Target: 5'- cGGGcCGGCccccGGcCGCCgcagcCGCAgCGGCCa -3' miRNA: 3'- cCUC-GUCGa---CC-GCGGa----GCGUgGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 98560 | 0.66 | 0.605059 |
Target: 5'- aGAGCGGCgugccgucGGCGUCcagguaggCGCGCgGcGCCa -3' miRNA: 3'- cCUCGUCGa-------CCGCGGa-------GCGUGgC-CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 57155 | 0.66 | 0.614916 |
Target: 5'- ---aCAGCagGGCGCgCUCGCcGCCcGCCa -3' miRNA: 3'- ccucGUCGa-CCGCG-GAGCG-UGGcCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 68440 | 0.66 | 0.614916 |
Target: 5'- -cAGCAGCaUGGCGCgggaGCGCCcGCUg -3' miRNA: 3'- ccUCGUCG-ACCGCGgag-CGUGGcCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 96483 | 0.66 | 0.614916 |
Target: 5'- cGGGCGGCgGGCGUCgccacggcaaCGCGgCGGgCa -3' miRNA: 3'- cCUCGUCGaCCGCGGa---------GCGUgGCCgG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 29122 | 0.66 | 0.614916 |
Target: 5'- cGAGCGGCUGcGCGagCUggcggaccgcUGCGCCGucGCCu -3' miRNA: 3'- cCUCGUCGAC-CGCg-GA----------GCGUGGC--CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 53728 | 0.66 | 0.614916 |
Target: 5'- cGGGGCGGaucGGCGCgCggcguagCGCGgauCCGGCg -3' miRNA: 3'- -CCUCGUCga-CCGCG-Ga------GCGU---GGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 85669 | 0.66 | 0.614916 |
Target: 5'- -cGGCcguGCUGGCGCgCagGCGCUcGCCg -3' miRNA: 3'- ccUCGu--CGACCGCG-GagCGUGGcCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 128181 | 0.66 | 0.614916 |
Target: 5'- cGGGCGGaa-GCGCCgccgcgacccCGCGCCuGGCCc -3' miRNA: 3'- cCUCGUCgacCGCGGa---------GCGUGG-CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 38217 | 0.66 | 0.614916 |
Target: 5'- cGGAgGCccgGGCcGcGCGCCUC-UACgCGGCCg -3' miRNA: 3'- -CCU-CG---UCGaC-CGCGGAGcGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 52266 | 0.66 | 0.614916 |
Target: 5'- -uGGCuGCgGcGCGCC-CGCACgGGCg -3' miRNA: 3'- ccUCGuCGaC-CGCGGaGCGUGgCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 33376 | 0.66 | 0.614916 |
Target: 5'- -cAGCAGUcuGCGCCUCcUGgCGGCCg -3' miRNA: 3'- ccUCGUCGacCGCGGAGcGUgGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 124072 | 0.66 | 0.605059 |
Target: 5'- cGGGGUggaacaGGCaGGUgaacuGCCgcCGCugCGGCCa -3' miRNA: 3'- -CCUCG------UCGaCCG-----CGGa-GCGugGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 29456 | 0.66 | 0.605059 |
Target: 5'- --cGCGGCgcGGCgGCCcgCGCGUCGGCCn -3' miRNA: 3'- ccuCGUCGa-CCG-CGGa-GCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 46265 | 0.66 | 0.605059 |
Target: 5'- gGGAGCcGCcGcCGCCgccgcgCGCACCGcGUCu -3' miRNA: 3'- -CCUCGuCGaCcGCGGa-----GCGUGGC-CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 53771 | 0.66 | 0.605059 |
Target: 5'- -aGGCGGCgagGGCGgCa-GCACCGcaGCCg -3' miRNA: 3'- ccUCGUCGa--CCGCgGagCGUGGC--CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 113940 | 0.66 | 0.605059 |
Target: 5'- cGGucGCGGC-GGCGUCUCcuacgcCGCCGGgCg -3' miRNA: 3'- -CCu-CGUCGaCCGCGGAGc-----GUGGCCgG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 131925 | 0.66 | 0.605059 |
Target: 5'- --cGCGGC-GGCGCggaggcacgUGCGCCGGCg -3' miRNA: 3'- ccuCGUCGaCCGCGga-------GCGUGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 101027 | 0.66 | 0.609 |
Target: 5'- --cGCGGCaGGCGCCgcaggcuccgccgcCGCGCgagccacggCGGCCg -3' miRNA: 3'- ccuCGUCGaCCGCGGa-------------GCGUG---------GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 4829 | 0.66 | 0.614916 |
Target: 5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3' miRNA: 3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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