Results 21 - 40 of 879 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 5' | -62.5 | NC_001847.1 | + | 77462 | 0.76 | 0.146129 |
Target: 5'- cGGGCuggGGCgGGCGCCgggCGC-CCGGCCc -3' miRNA: 3'- cCUCG---UCGaCCGCGGa--GCGuGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 131830 | 0.78 | 0.119659 |
Target: 5'- cGGcGGCAGC-GGCGCC-CGCGCCGcGCUc -3' miRNA: 3'- -CC-UCGUCGaCCGCGGaGCGUGGC-CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 78308 | 0.8 | 0.089121 |
Target: 5'- cGGGCGGCUGggccgcccccuccccGCGCCcccaggCGCGCCGGCCc -3' miRNA: 3'- cCUCGUCGAC---------------CGCGGa-----GCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 9655 | 0.85 | 0.036394 |
Target: 5'- cGAGCAGCcgGGCGuCCUCGCGCCcGCCg -3' miRNA: 3'- cCUCGUCGa-CCGC-GGAGCGUGGcCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 86521 | 0.75 | 0.16938 |
Target: 5'- -cGGCGGCUgGGCGCCcgCGUGCUGGCg -3' miRNA: 3'- ccUCGUCGA-CCGCGGa-GCGUGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 132339 | 0.76 | 0.157367 |
Target: 5'- cGGcGCGGCUGGCGgC-CGCGCucgCGGCCc -3' miRNA: 3'- -CCuCGUCGACCGCgGaGCGUG---GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 17006 | 0.78 | 0.110935 |
Target: 5'- gGGAcGCAGC--GCGCCUCGCAgaCGGCCu -3' miRNA: 3'- -CCU-CGUCGacCGCGGAGCGUg-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 74651 | 0.86 | 0.031065 |
Target: 5'- cGGGGCAGCUGcuGCGCCUgGaGCCGGCCg -3' miRNA: 3'- -CCUCGUCGAC--CGCGGAgCgUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 106126 | 0.76 | 0.157367 |
Target: 5'- --cGCGGCgcgGGCGCCgcugccgccgGCGCCGGCCu -3' miRNA: 3'- ccuCGUCGa--CCGCGGag--------CGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 15537 | 0.87 | 0.026505 |
Target: 5'- cGGGCuGCUGGCGCCggugCGCGCgCGGCCg -3' miRNA: 3'- cCUCGuCGACCGCGGa---GCGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 132383 | 0.78 | 0.116682 |
Target: 5'- gGGGGCgccGGCgccGGCGCCgcCGCGCCgGGCCg -3' miRNA: 3'- -CCUCG---UCGa--CCGCGGa-GCGUGG-CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 100837 | 0.76 | 0.146129 |
Target: 5'- cGGGCGGCUccGGCcaggGCCggaGCGCCGGCCc -3' miRNA: 3'- cCUCGUCGA--CCG----CGGag-CGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 84546 | 0.79 | 0.095246 |
Target: 5'- cGGGGCGGggcGuGCGCCUCGUACaCGGCCu -3' miRNA: 3'- -CCUCGUCga-C-CGCGGAGCGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 32744 | 0.79 | 0.0905 |
Target: 5'- cGGccGGCGGCUauuuucgcgggcGGCGCUUCGCgacgGCCGGCCg -3' miRNA: 3'- -CC--UCGUCGA------------CCGCGGAGCG----UGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 124576 | 0.8 | 0.0756 |
Target: 5'- gGGGGCcGCcGGCGCCgggcccgGCGCCGGCCg -3' miRNA: 3'- -CCUCGuCGaCCGCGGag-----CGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 25185 | 0.82 | 0.063067 |
Target: 5'- aGGuAGCAGCUGGCcagcgaGCCcCGCGCgCGGCCg -3' miRNA: 3'- -CC-UCGUCGACCG------CGGaGCGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 53718 | 0.75 | 0.182207 |
Target: 5'- gGGccGGCGGCUGGCGCUgUGCGCCuGCg -3' miRNA: 3'- -CC--UCGUCGACCGCGGaGCGUGGcCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 11969 | 0.75 | 0.16938 |
Target: 5'- uGGGCGGCUGaGCGCCgcCGCGCCGucuCCg -3' miRNA: 3'- cCUCGUCGAC-CGCGGa-GCGUGGCc--GG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 106076 | 0.76 | 0.161283 |
Target: 5'- aGGGGC-GCcGGCGCCgCGCGgCCGGCg -3' miRNA: 3'- -CCUCGuCGaCCGCGGaGCGU-GGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 12972 | 0.76 | 0.161283 |
Target: 5'- uGAGCAGgccaUGGCGCUgcaGUACCGGCUg -3' miRNA: 3'- cCUCGUCg---ACCGCGGag-CGUGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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