miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 5926 0.66 0.921081
Target:  5'- -aGGCGGAugGGCggCGGACGACG-GGCc -3'
miRNA:   3'- caCCGCUU--UCGg-GUUUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 82323 0.66 0.931938
Target:  5'- --cGCGAAAcGCCCGAgguccagugugcGCGGCGccagGGCGc -3'
miRNA:   3'- cacCGCUUU-CGGGUU------------UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 44705 0.66 0.913493
Target:  5'- -cGGUaGAGAGCCCAggguAGCGGgaagggcgccgccuCGUGGCc -3'
miRNA:   3'- caCCG-CUUUCGGGU----UUGCU--------------GCACCGc -5'
6351 5' -54.5 NC_001847.1 + 17258 0.66 0.915281
Target:  5'- -gGGCGGggaagcagccgcAGGCCCAGuCGcCGgUGGCGu -3'
miRNA:   3'- caCCGCU------------UUCGGGUUuGCuGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 38095 0.66 0.915281
Target:  5'- -cGGgGAAagcAGCCCGGACGcCGcugcccGGCGg -3'
miRNA:   3'- caCCgCUU---UCGGGUUUGCuGCa-----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 66664 0.66 0.915281
Target:  5'- cUGGCGcgcuugcGCCCGcGCGGCGgGGCc -3'
miRNA:   3'- cACCGCuuu----CGGGUuUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 70314 0.66 0.915281
Target:  5'- -gGGCGGcucGGCaCCAGgucguagucuACGAgGUGGCGc -3'
miRNA:   3'- caCCGCUu--UCG-GGUU----------UGCUgCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 58910 0.66 0.915281
Target:  5'- aUGGCGucGGGUCgGGACGAgGUcGGCa -3'
miRNA:   3'- cACCGCu-UUCGGgUUUGCUgCA-CCGc -5'
6351 5' -54.5 NC_001847.1 + 90723 0.66 0.915281
Target:  5'- cGUGcGCGAAcgcAGCCgCucGCGgcGCGUGGCc -3'
miRNA:   3'- -CAC-CGCUU---UCGG-GuuUGC--UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 36163 0.66 0.920512
Target:  5'- -cGGCGAGacguacuGGgCCAAccccuACGcCGUGGCGc -3'
miRNA:   3'- caCCGCUU-------UCgGGUU-----UGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 95633 0.66 0.941806
Target:  5'- uGUGGCGGGccGCUCuGGCG-CGgggGGCGg -3'
miRNA:   3'- -CACCGCUUu-CGGGuUUGCuGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 70708 0.66 0.921081
Target:  5'- -cGGCGggGGCgCCc-GCGGCGaGcGCGa -3'
miRNA:   3'- caCCGCuuUCG-GGuuUGCUGCaC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 114031 0.66 0.921081
Target:  5'- -cGGgGucaucacGCCC-GGCGGCGUGGUGa -3'
miRNA:   3'- caCCgCuuu----CGGGuUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 127280 0.66 0.921081
Target:  5'- uGUGGCGGccGCCUcuGCaGGCGccaccGGCGg -3'
miRNA:   3'- -CACCGCUuuCGGGuuUG-CUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 132264 0.66 0.921081
Target:  5'- -cGGCGAcgcacccGGCCCGacGACGACGcccGCGa -3'
miRNA:   3'- caCCGCUu------UCGGGU--UUGCUGCac-CGC- -5'
6351 5' -54.5 NC_001847.1 + 3285 0.66 0.921081
Target:  5'- -cGGCGAGcacggcgcgcAGCUCGGcgagcGCGGCGcgGGCGc -3'
miRNA:   3'- caCCGCUU----------UCGGGUU-----UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 73744 0.66 0.921081
Target:  5'- --cGCGAGGGCaguuCCAAGCGcCG-GGCGg -3'
miRNA:   3'- cacCGCUUUCG----GGUUUGCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 98767 0.66 0.921081
Target:  5'- -cGGCGcgcgcuGCCCGggccgcggcGGCGccGCGUGGCGc -3'
miRNA:   3'- caCCGCuuu---CGGGU---------UUGC--UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 117293 0.66 0.921081
Target:  5'- -cGGCGGcgcuggcaacgcGAGCCgCGAugggcgaccuaGCGGCGgggGGCGg -3'
miRNA:   3'- caCCGCU------------UUCGG-GUU-----------UGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 23425 0.66 0.926634
Target:  5'- -cGGCGggGcGUCCGGGgucguCGGCGgGGCGu -3'
miRNA:   3'- caCCGCuuU-CGGGUUU-----GCUGCaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.