miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 29317 0.68 0.852359
Target:  5'- -cGGCGc-GGCCC--GCGACGcGGUGg -3'
miRNA:   3'- caCCGCuuUCGGGuuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 29514 0.7 0.763335
Target:  5'- -cGGCGGAGGUgCCGGcGCGGC-UGGCGg -3'
miRNA:   3'- caCCGCUUUCG-GGUU-UGCUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 29623 0.66 0.941806
Target:  5'- gGUGGaggacaUGAGGGCCgGGGCGcCGcgGGCGg -3'
miRNA:   3'- -CACC------GCUUUCGGgUUUGCuGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 29647 0.75 0.497458
Target:  5'- gGUGGCugcGGAcgcgcugcccuucAGCgCAAACGGCGUGGCGc -3'
miRNA:   3'- -CACCG---CUU-------------UCGgGUUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 30333 0.68 0.870947
Target:  5'- -cGGCGgcGGgCUGGACGACGagcaccgcgcguugcUGGCGg -3'
miRNA:   3'- caCCGCuuUCgGGUUUGCUGC---------------ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 30384 0.68 0.849143
Target:  5'- -cGGCGAGgacgagcgccggcGGCCCGAguggccgccgcgccGCGGCG-GGCu -3'
miRNA:   3'- caCCGCUU-------------UCGGGUU--------------UGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 30385 0.75 0.469436
Target:  5'- cUGGUGcgGGCgCAGACGGCGcUGGCGc -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 30713 0.68 0.875398
Target:  5'- -cGGCGcuccuGGAcGCCCGcGCgGACGUGGCc -3'
miRNA:   3'- caCCGC-----UUU-CGGGUuUG-CUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 30740 0.76 0.441323
Target:  5'- -cGcGCGcuGGCCCGAGCGGCGcgcUGGCGc -3'
miRNA:   3'- caC-CGCuuUCGGGUUUGCUGC---ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 30933 0.73 0.599869
Target:  5'- -cGGCGGAGGCCUucgcauAAACGGCGcUGcGCGc -3'
miRNA:   3'- caCCGCUUUCGGG------UUUGCUGC-AC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 31311 0.66 0.936995
Target:  5'- -cGGCGc--GCCgCGGGCGGCGgccUGGUGg -3'
miRNA:   3'- caCCGCuuuCGG-GUUUGCUGC---ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 31357 0.69 0.80993
Target:  5'- -cGGCGGAAGCCCcgcCGGCccgGGUGc -3'
miRNA:   3'- caCCGCUUUCGGGuuuGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 31603 0.68 0.867936
Target:  5'- uGUGGCcagcccGAGuCCCGGugGGCG-GGCGc -3'
miRNA:   3'- -CACCGcu----UUC-GGGUUugCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 31939 0.66 0.915281
Target:  5'- -cGGCGGguaagcggacGAGCCUgccGCGGCGgcGGCGg -3'
miRNA:   3'- caCCGCU----------UUCGGGuu-UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 31987 0.72 0.662314
Target:  5'- -gGGCGcGAAGCCCGGGaggGACGcgGGCGu -3'
miRNA:   3'- caCCGC-UUUCGGGUUUg--CUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 32104 0.68 0.875398
Target:  5'- -gGGCGcGAGGCCCGGGCucgggcccccgGGCGccgggGGCGg -3'
miRNA:   3'- caCCGC-UUUCGGGUUUG-----------CUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 32141 0.67 0.896412
Target:  5'- -gGGCGccgccgcGCCCGcgcacgccgcGACGGCGUGcGCGg -3'
miRNA:   3'- caCCGCuuu----CGGGU----------UUGCUGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 32318 0.71 0.683019
Target:  5'- -gGGUcgcaGggGGCCCGcGCGGCGcGGCGc -3'
miRNA:   3'- caCCG----CuuUCGGGUuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 32539 0.68 0.875398
Target:  5'- -aGGCGAugcgcgcgcAGCCCucggcgcuGGGCGACcUGGCGg -3'
miRNA:   3'- caCCGCUu--------UCGGG--------UUUGCUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 32842 0.66 0.931419
Target:  5'- -gGGCGAGgacuacgacgccgGGCCCAucgaccucACGGCGgccgacGGCGa -3'
miRNA:   3'- caCCGCUU-------------UCGGGUu-------UGCUGCa-----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.