miRNA display CGI


Results 61 - 80 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 105090 0.71 0.683019
Target:  5'- -cGGCGGAAGCCgCcgucGGCGGCGgggccgccgGGCGg -3'
miRNA:   3'- caCCGCUUUCGG-Gu---UUGCUGCa--------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 104889 0.75 0.497458
Target:  5'- gGUGGCGGcgagcgccccgcgGGGCCCGcGCGGCGgcgGGCc -3'
miRNA:   3'- -CACCGCU-------------UUCGGGUuUGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 104726 0.78 0.347099
Target:  5'- -cGuGCGAGAGCCCGccGCGGCGcGGCGg -3'
miRNA:   3'- caC-CGCUUUCGGGUu-UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 104244 0.75 0.488679
Target:  5'- gGUGcGCG--GGCCCAGGCG-CGUGGCc -3'
miRNA:   3'- -CAC-CGCuuUCGGGUUUGCuGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 104076 0.66 0.936995
Target:  5'- -cGGCGcgccGAGCCCccagcgguuGGCGGCGcGGUGg -3'
miRNA:   3'- caCCGCu---UUCGGGu--------UUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 103952 0.7 0.753616
Target:  5'- --aGCGAGAGCaCCGucGAUGGCGUcGGCGc -3'
miRNA:   3'- cacCGCUUUCG-GGU--UUGCUGCA-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 103573 0.69 0.800909
Target:  5'- -gGGCGAGgccGGCCCGccgccGGCGGCGccGGCc -3'
miRNA:   3'- caCCGCUU---UCGGGU-----UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 103345 0.67 0.889641
Target:  5'- -gGGCaaguGCCCGAcGCGgggaACGUGGCGg -3'
miRNA:   3'- caCCGcuuuCGGGUU-UGC----UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 103286 0.67 0.896412
Target:  5'- -cGGCGgcGGCagCAGcgGCGGCGgcggGGCGg -3'
miRNA:   3'- caCCGCuuUCGg-GUU--UGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 103149 0.67 0.882635
Target:  5'- -cGcGCGAAGGUCCucGCGGCucgagGGCGg -3'
miRNA:   3'- caC-CGCUUUCGGGuuUGCUGca---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 103016 0.72 0.651919
Target:  5'- -cGGCGGc-GCCCAGcgccgGCGGCG-GGCGg -3'
miRNA:   3'- caCCGCUuuCGGGUU-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 102767 0.66 0.921081
Target:  5'- -aGGCGcGAcGCCC--GCGACGccGGCGc -3'
miRNA:   3'- caCCGCuUU-CGGGuuUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 102691 0.66 0.921081
Target:  5'- -gGGCGggGGCa-GGGCGcCG-GGCGg -3'
miRNA:   3'- caCCGCuuUCGggUUUGCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 101082 0.69 0.800909
Target:  5'- --cGCGggGGCCgGGuCGGCGgGGCGg -3'
miRNA:   3'- cacCGCuuUCGGgUUuGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 100974 0.72 0.672684
Target:  5'- -cGGCGccGAGCuCCGAGCGACGgaaGGUGc -3'
miRNA:   3'- caCCGCu-UUCG-GGUUUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 100630 0.68 0.860254
Target:  5'- cUGGCGAccGCCUGGcuGCGGCGccagGGCc -3'
miRNA:   3'- cACCGCUuuCGGGUU--UGCUGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 100594 0.68 0.844257
Target:  5'- uUGGCGGccuguGGcCCCAAGCGcccgGCG-GGCGg -3'
miRNA:   3'- cACCGCUu----UC-GGGUUUGC----UGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 100242 0.68 0.844257
Target:  5'- cUGGCGAGAcCCCaAAGCGccaauUGUGGCa -3'
miRNA:   3'- cACCGCUUUcGGG-UUUGCu----GCACCGc -5'
6351 5' -54.5 NC_001847.1 + 98767 0.66 0.921081
Target:  5'- -cGGCGcgcgcuGCCCGggccgcggcGGCGccGCGUGGCGc -3'
miRNA:   3'- caCCGCuuu---CGGGU---------UUGC--UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 98242 0.69 0.818784
Target:  5'- -aGGCGAc-GCCguGGCGGCGgGGCa -3'
miRNA:   3'- caCCGCUuuCGGguUUGCUGCaCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.