miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 78293 0.67 0.909235
Target:  5'- -gGGCcgccGGGCgCAGACGGCGcGGCGc -3'
miRNA:   3'- caCCGcu--UUCGgGUUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 22592 0.67 0.909235
Target:  5'- -gGGC-AGGGCCCGccCGgucGCGUGGCa -3'
miRNA:   3'- caCCGcUUUCGGGUuuGC---UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 22428 0.67 0.909235
Target:  5'- -gGGCG-GGGCCCGAgaccacGCGGuCG-GGCGa -3'
miRNA:   3'- caCCGCuUUCGGGUU------UGCU-GCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 92488 0.67 0.902945
Target:  5'- -cGGCGgcGGCCUcuucgacaaaggGcACGACGUcGGCGc -3'
miRNA:   3'- caCCGCuuUCGGG------------UuUGCUGCA-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 47492 0.67 0.896412
Target:  5'- -cGGCGc-AGCCCAAACaGCGcaguUGGCu -3'
miRNA:   3'- caCCGCuuUCGGGUUUGcUGC----ACCGc -5'
6351 5' -54.5 NC_001847.1 + 43002 0.67 0.896412
Target:  5'- -cGGCG--GGCCCcgcGGACGGCGgaauuggGGCa -3'
miRNA:   3'- caCCGCuuUCGGG---UUUGCUGCa------CCGc -5'
6351 5' -54.5 NC_001847.1 + 96378 0.67 0.889641
Target:  5'- aUGGCG-GGGCC--GGCGGCGgcaaUGGCGg -3'
miRNA:   3'- cACCGCuUUCGGguUUGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 96315 0.67 0.889641
Target:  5'- aUGGCG-GGGCC--GGCGGCGgcaaUGGCGg -3'
miRNA:   3'- cACCGCuUUCGGguUUGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 532 0.67 0.889641
Target:  5'- -gGGCaaguGCCCGAcGCGgggaACGUGGCGg -3'
miRNA:   3'- caCCGcuuuCGGGUU-UGC----UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 16808 0.67 0.889641
Target:  5'- -aGGCcaaAGAGCCCAAACuccgGAUcgGUGGCGc -3'
miRNA:   3'- caCCGc--UUUCGGGUUUG----CUG--CACCGC- -5'
6351 5' -54.5 NC_001847.1 + 33223 0.67 0.888951
Target:  5'- aUGGCGAugcuGGCCgAgugcggcuucgacGACGACG-GGCu -3'
miRNA:   3'- cACCGCUu---UCGGgU-------------UUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 103149 0.67 0.882635
Target:  5'- -cGcGCGAAGGUCCucGCGGCucgagGGCGg -3'
miRNA:   3'- caC-CGCUUUCGGGuuUGCUGca---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 88562 0.67 0.882635
Target:  5'- -cGGCGggGcugacGCCCGGcgcggacuacGCGACGUucgacgugGGCGg -3'
miRNA:   3'- caCCGCuuU-----CGGGUU----------UGCUGCA--------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 55006 0.67 0.882635
Target:  5'- aUGGCGGcgcugGAGUCCAuGCGcGCGUcgGGCGc -3'
miRNA:   3'- cACCGCU-----UUCGGGUuUGC-UGCA--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 32990 0.67 0.882635
Target:  5'- -gGGCGGGcagggcGGCCgGAGCGGcCGgggGGCGc -3'
miRNA:   3'- caCCGCUU------UCGGgUUUGCU-GCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 14139 0.67 0.909235
Target:  5'- -gGGCGggGcccgcGCCUggGCGGCcgcuagGGCGa -3'
miRNA:   3'- caCCGCuuU-----CGGGuuUGCUGca----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 125405 0.67 0.909235
Target:  5'- -gGGC-AGGGCCCGccCGgucGCGUGGCa -3'
miRNA:   3'- caCCGcUUUCGGGUuuGC---UGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 58999 0.67 0.909235
Target:  5'- -cGGCGGaggcGAGCUUGGaaagagcguGCGACGgUGGCGg -3'
miRNA:   3'- caCCGCU----UUCGGGUU---------UGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 55275 0.67 0.909235
Target:  5'- -cGGCGccGGGCCCGGACGG-GcGGCa -3'
miRNA:   3'- caCCGCu-UUCGGGUUUGCUgCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 125241 0.67 0.909235
Target:  5'- -gGGCG-GGGCCCGAgaccacGCGGuCG-GGCGa -3'
miRNA:   3'- caCCGCuUUCGGGUU------UGCU-GCaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.