miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 59433 0.7 0.753616
Target:  5'- -cGGCGgcGGCCC--GCGGCccGUGGCc -3'
miRNA:   3'- caCCGCuuUCGGGuuUGCUG--CACCGc -5'
6351 5' -54.5 NC_001847.1 + 62120 0.7 0.753616
Target:  5'- -cGGCGuguuGCCCAggucugugAGCGGCGUGcGCa -3'
miRNA:   3'- caCCGCuuu-CGGGU--------UUGCUGCAC-CGc -5'
6351 5' -54.5 NC_001847.1 + 54571 0.7 0.753616
Target:  5'- -aGGaCGAcGGCCCcgcgggcuGGGCGGCGcUGGCGg -3'
miRNA:   3'- caCC-GCUuUCGGG--------UUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 29514 0.7 0.763335
Target:  5'- -cGGCGGAGGUgCCGGcGCGGC-UGGCGg -3'
miRNA:   3'- caCCGCUUUCG-GGUU-UGCUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 54674 0.7 0.763335
Target:  5'- -cGGgGAGcgcGGCCCGAcgGCGGCGgcGGCGc -3'
miRNA:   3'- caCCgCUU---UCGGGUU--UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 132641 0.7 0.763335
Target:  5'- -aGcGCGAGgcGGCCCucGCGACGUcuucacacGGCGg -3'
miRNA:   3'- caC-CGCUU--UCGGGuuUGCUGCA--------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 81835 0.7 0.763335
Target:  5'- -aGGCG-AGGUCCAgcgcguacgucAGCGGCGUgaGGCGg -3'
miRNA:   3'- caCCGCuUUCGGGU-----------UUGCUGCA--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 116552 0.7 0.763335
Target:  5'- -aGGCGAcguguGCCUggGCGACuuUGGCGc -3'
miRNA:   3'- caCCGCUuu---CGGGuuUGCUGc-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 132327 0.7 0.763335
Target:  5'- -cGGCGGAGGUgCCGGcGCGGC-UGGCGg -3'
miRNA:   3'- caCCGCUUUCG-GGUU-UGCUGcACCGC- -5'
6351 5' -54.5 NC_001847.1 + 38969 0.7 0.770067
Target:  5'- aUGGCGgcGGCCgcggcggggcuuagUAGACGAUGUGGaCGu -3'
miRNA:   3'- cACCGCuuUCGG--------------GUUUGCUGCACC-GC- -5'
6351 5' -54.5 NC_001847.1 + 87998 0.7 0.772933
Target:  5'- -cGGCc-GGGCCCGAGgGGCGcGGCGu -3'
miRNA:   3'- caCCGcuUUCGGGUUUgCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 53836 0.7 0.772933
Target:  5'- cUGGCGgcGGCagcGGCGGCGcUGGCGg -3'
miRNA:   3'- cACCGCuuUCGgguUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 66335 0.7 0.772933
Target:  5'- -cGGCGGgugGGGCgCGGGCGccgcCGUGGCGa -3'
miRNA:   3'- caCCGCU---UUCGgGUUUGCu---GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 72783 0.7 0.776737
Target:  5'- -cGGCGu--GCCUggGCGAaauuucggcgcucuuUGUGGCGg -3'
miRNA:   3'- caCCGCuuuCGGGuuUGCU---------------GCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 36666 0.7 0.782402
Target:  5'- -aGGUGggGgcuucgaugcGCCCcccgcuggacgaGAGCGGCGUGGUGg -3'
miRNA:   3'- caCCGCuuU----------CGGG------------UUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 58218 0.7 0.782402
Target:  5'- -gGGCGGAucuGCCCGccgGGCGGCaGcGGCGg -3'
miRNA:   3'- caCCGCUUu--CGGGU---UUGCUG-CaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 130526 0.7 0.782402
Target:  5'- cGUGGUcccAGAGCgCugcGACGACGUGGCc -3'
miRNA:   3'- -CACCGc--UUUCGgGu--UUGCUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 111678 0.7 0.782402
Target:  5'- -aGcGCGAuGGCCgAGGCGGCGgacgcGGCGa -3'
miRNA:   3'- caC-CGCUuUCGGgUUUGCUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 122288 0.7 0.782402
Target:  5'- cGUGGUuauuaGGAGCCCAuGCGGCGUaccGGCc -3'
miRNA:   3'- -CACCGc----UUUCGGGUuUGCUGCA---CCGc -5'
6351 5' -54.5 NC_001847.1 + 23384 0.69 0.79173
Target:  5'- -gGGUGggGGCUgGGugGGCGgagcucacuUGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUUugCUGC---------ACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.