miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 32990 0.67 0.882635
Target:  5'- -gGGCGGGcagggcGGCCgGAGCGGcCGgggGGCGc -3'
miRNA:   3'- caCCGCUU------UCGGgUUUGCU-GCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 33115 0.68 0.835955
Target:  5'- -gGGcCGggGGCCCcguaccuGCGGCG-GGUGg -3'
miRNA:   3'- caCC-GCuuUCGGGuu-----UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 33223 0.67 0.888951
Target:  5'- aUGGCGAugcuGGCCgAgugcggcuucgacGACGACG-GGCu -3'
miRNA:   3'- cACCGCUu---UCGGgU-------------UUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 33498 0.75 0.498438
Target:  5'- -cGGCGgcGGCgCGGGCGGCGgcgGGCGc -3'
miRNA:   3'- caCCGCuuUCGgGUUUGCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 33529 0.67 0.889641
Target:  5'- --cGCGGAGGCgCCGGGCG-CG-GGCGc -3'
miRNA:   3'- cacCGCUUUCG-GGUUUGCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 33690 0.69 0.818784
Target:  5'- -aGGCGcAGGCgCucGCGGCGcGGCGg -3'
miRNA:   3'- caCCGCuUUCGgGuuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 33950 0.66 0.936995
Target:  5'- -aGGCGcuGGAGaaCCCGAGCG-CGcUGGCGc -3'
miRNA:   3'- caCCGC--UUUC--GGGUUUGCuGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 33988 0.66 0.936995
Target:  5'- cUGGcCGGgcuGGGCCCAGccuucGCGGCGgugcugGGCa -3'
miRNA:   3'- cACC-GCU---UUCGGGUU-----UGCUGCa-----CCGc -5'
6351 5' -54.5 NC_001847.1 + 34040 0.67 0.909235
Target:  5'- -aGGCGAuGGGCCCc-GCGGCGcGcGCGu -3'
miRNA:   3'- caCCGCU-UUCGGGuuUGCUGCaC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 34089 0.67 0.896412
Target:  5'- cGUGGCGGccGCCguGGCucGCGcGGCGg -3'
miRNA:   3'- -CACCGCUuuCGGguUUGc-UGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 34255 0.67 0.889641
Target:  5'- -cGGCGcGAGGCgCAGAcCGGCGcgcGGCGg -3'
miRNA:   3'- caCCGC-UUUCGgGUUU-GCUGCa--CCGC- -5'
6351 5' -54.5 NC_001847.1 + 34494 0.67 0.882635
Target:  5'- -cGGCGAggaugcgagcgAGGCCgacgCGGACGGCGccGGCGa -3'
miRNA:   3'- caCCGCU-----------UUCGG----GUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 34589 0.69 0.818784
Target:  5'- --uGCGcAAGGCCCGGGCGcugGCGcGGCGg -3'
miRNA:   3'- cacCGC-UUUCGGGUUUGC---UGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 35708 0.69 0.79173
Target:  5'- cGUGGaGGAGGCgCCGGAgcugGACGUGGCc -3'
miRNA:   3'- -CACCgCUUUCG-GGUUUg---CUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 35880 0.68 0.867936
Target:  5'- -cGGCGgcAGCUgGAGuCGGCGgcGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUUU-GCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 36163 0.66 0.920512
Target:  5'- -cGGCGAGacguacuGGgCCAAccccuACGcCGUGGCGc -3'
miRNA:   3'- caCCGCUU-------UCgGGUU-----UGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 36496 0.68 0.844257
Target:  5'- cGUGGCG---GCCCuucuGGGCGACGaagcGGCGg -3'
miRNA:   3'- -CACCGCuuuCGGG----UUUGCUGCa---CCGC- -5'
6351 5' -54.5 NC_001847.1 + 36666 0.7 0.782402
Target:  5'- -aGGUGggGgcuucgaugcGCCCcccgcuggacgaGAGCGGCGUGGUGg -3'
miRNA:   3'- caCCGCuuU----------CGGG------------UUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 36983 0.74 0.538285
Target:  5'- -cGGCGAGcgGGCCCGcgccgAGCGGCGgcGGCGc -3'
miRNA:   3'- caCCGCUU--UCGGGU-----UUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 37223 0.74 0.548423
Target:  5'- uUGGCGgcGGCgCGGACGACccGGCGg -3'
miRNA:   3'- cACCGCuuUCGgGUUUGCUGcaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.