miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 36666 0.7 0.782402
Target:  5'- -aGGUGggGgcuucgaugcGCCCcccgcuggacgaGAGCGGCGUGGUGg -3'
miRNA:   3'- caCCGCuuU----------CGGG------------UUUGCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 53836 0.7 0.772933
Target:  5'- cUGGCGgcGGCagcGGCGGCGcUGGCGg -3'
miRNA:   3'- cACCGCuuUCGgguUUGCUGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 124478 0.7 0.743786
Target:  5'- -gGGCGAGccCCCcGGCGACGgguaUGGCGa -3'
miRNA:   3'- caCCGCUUucGGGuUUGCUGC----ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 77781 0.71 0.692284
Target:  5'- cGUGcG-GGAGGCCCAgcgcggaugucugGAgGACGUGGCGc -3'
miRNA:   3'- -CAC-CgCUUUCGGGU-------------UUgCUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 134170 0.69 0.80993
Target:  5'- -cGGCGGAAGCCCcgcCGGCccgGGUGc -3'
miRNA:   3'- caCCGCUUUCGGGuuuGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 101082 0.69 0.800909
Target:  5'- --cGCGggGGCCgGGuCGGCGgGGCGg -3'
miRNA:   3'- cacCGCuuUCGGgUUuGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 65738 0.69 0.79173
Target:  5'- -gGGCGGc-GCUCGAgaGCGugGUGGCc -3'
miRNA:   3'- caCCGCUuuCGGGUU--UGCugCACCGc -5'
6351 5' -54.5 NC_001847.1 + 56867 0.69 0.813492
Target:  5'- -cGGCGGcccgggcgcggccacGGGCCCGccGGCGACGgcgacgccGGCGg -3'
miRNA:   3'- caCCGCU---------------UUCGGGU--UUGCUGCa-------CCGC- -5'
6351 5' -54.5 NC_001847.1 + 4541 0.69 0.818784
Target:  5'- -cGGCGGccGCCCgcGggUGGCGcGGCGu -3'
miRNA:   3'- caCCGCUuuCGGG--UuuGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 78341 0.69 0.818784
Target:  5'- -aGGCGcgccGGCCCcgugagcgcgacGAACGGCG-GGCGg -3'
miRNA:   3'- caCCGCuu--UCGGG------------UUUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 66059 0.69 0.80993
Target:  5'- -cGGCGgcGGCgCCGggGGCGACGcgGGCu -3'
miRNA:   3'- caCCGCuuUCG-GGU--UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 35708 0.69 0.79173
Target:  5'- cGUGGaGGAGGCgCCGGAgcugGACGUGGCc -3'
miRNA:   3'- -CACCgCUUUCG-GGUUUg---CUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 135131 0.71 0.683019
Target:  5'- -gGGUcgcaGggGGCCCGcGCGGCGcGGCGc -3'
miRNA:   3'- caCCG----CuuUCGGGUuUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 80909 0.76 0.423119
Target:  5'- cGUGGCc---GCCCAAGCGGCcGUGGCc -3'
miRNA:   3'- -CACCGcuuuCGGGUUUGCUG-CACCGc -5'
6351 5' -54.5 NC_001847.1 + 105939 0.69 0.827462
Target:  5'- -cGGCcgagagcaccGGGAGCCCGgcggcgccGGCGGCGcGGCGg -3'
miRNA:   3'- caCCG----------CUUUCGGGU--------UUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 65006 0.68 0.844257
Target:  5'- cUGuGCGAGcggaccgcaagcGGCgCGAGCGccACGUGGCGg -3'
miRNA:   3'- cAC-CGCUU------------UCGgGUUUGC--UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 62491 0.68 0.844257
Target:  5'- -cGGCGGGcGGCC---GCGGgGUGGCGg -3'
miRNA:   3'- caCCGCUU-UCGGguuUGCUgCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 74175 0.69 0.827462
Target:  5'- -cGGCGuGGGGCCCAuGCcGCGcGGCGc -3'
miRNA:   3'- caCCGC-UUUCGGGUuUGcUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 54387 0.69 0.827462
Target:  5'- -cGGCGGGcGGCCgCGGGCGAgGcgGGCGc -3'
miRNA:   3'- caCCGCUU-UCGG-GUUUGCUgCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 3819 0.69 0.827462
Target:  5'- -gGGCGucGGCC---GCGAgCGUGGCGu -3'
miRNA:   3'- caCCGCuuUCGGguuUGCU-GCACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.