miRNA display CGI


Results 81 - 100 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 3973 0.69 0.827462
Target:  5'- -cGGCGAGGGCgCCGGGgGcCG-GGCGc -3'
miRNA:   3'- caCCGCUUUCG-GGUUUgCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 3126 0.69 0.827462
Target:  5'- -cGGCcgagagcaccGGGAGCCCGgcggcgccGGCGGCGcGGCGg -3'
miRNA:   3'- caCCG----------CUUUCGGGU--------UUGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 41089 0.69 0.827462
Target:  5'- cUGGUGccGGCCCAGcugcgccugcACGugGuUGGCGc -3'
miRNA:   3'- cACCGCuuUCGGGUU----------UGCugC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 56876 0.69 0.826602
Target:  5'- -aGGCGAGcaggcAGUCCAGgugcgcgGCGACGUcGGCc -3'
miRNA:   3'- caCCGCUU-----UCGGGUU-------UGCUGCA-CCGc -5'
6351 5' -54.5 NC_001847.1 + 98242 0.69 0.818784
Target:  5'- -aGGCGAc-GCCguGGCGGCGgGGCa -3'
miRNA:   3'- caCCGCUuuCGGguUUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 63295 0.69 0.818784
Target:  5'- -cGGCGGAAGCaCCGgguccagcAGCG-CGUGGUu -3'
miRNA:   3'- caCCGCUUUCG-GGU--------UUGCuGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 115697 0.69 0.818784
Target:  5'- -gGGCGAGAGCCgGcuGCGGCccGUGuGCGc -3'
miRNA:   3'- caCCGCUUUCGGgUu-UGCUG--CAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 48252 0.69 0.818784
Target:  5'- -cGaGCGGAugcGCCCGAGCGAC-UGGUa -3'
miRNA:   3'- caC-CGCUUu--CGGGUUUGCUGcACCGc -5'
6351 5' -54.5 NC_001847.1 + 123649 0.69 0.817906
Target:  5'- uUGGCuGAAGGCgccugagCCAGAUG-UGUGGCGg -3'
miRNA:   3'- cACCG-CUUUCG-------GGUUUGCuGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 41880 0.69 0.80993
Target:  5'- -cGGCGcgauacGGCCCGcGCGGCGaGGCa -3'
miRNA:   3'- caCCGCuu----UCGGGUuUGCUGCaCCGc -5'
6351 5' -54.5 NC_001847.1 + 31357 0.69 0.80993
Target:  5'- -cGGCGGAAGCCCcgcCGGCccgGGUGc -3'
miRNA:   3'- caCCGCUUUCGGGuuuGCUGca-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 5021 0.69 0.809035
Target:  5'- -cGGCGcggagggGAAGCUCGGGCGACc-GGCGg -3'
miRNA:   3'- caCCGC-------UUUCGGGUUUGCUGcaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 64213 0.69 0.800909
Target:  5'- -gGGuCGggGuGCCCGGGCGGCG-GcGCGa -3'
miRNA:   3'- caCC-GCuuU-CGGGUUUGCUGCaC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 760 0.69 0.800909
Target:  5'- -gGGCGAGgccGGCCCGccgccGGCGGCGccGGCc -3'
miRNA:   3'- caCCGCUU---UCGGGU-----UUGCUGCa-CCGc -5'
6351 5' -54.5 NC_001847.1 + 61984 0.69 0.799998
Target:  5'- -cGGCGGgcauaauGGGCCCGAagaGCGGCGcggGGCc -3'
miRNA:   3'- caCCGCU-------UUCGGGUU---UGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 53761 0.69 0.79173
Target:  5'- -cGGCG---GCCCGAgGCGGCGagGGCGg -3'
miRNA:   3'- caCCGCuuuCGGGUU-UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 23384 0.69 0.79173
Target:  5'- -gGGUGggGGCUgGGugGGCGgagcucacuUGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUUugCUGC---------ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 58218 0.7 0.782402
Target:  5'- -gGGCGGAucuGCCCGccgGGCGGCaGcGGCGg -3'
miRNA:   3'- caCCGCUUu--CGGGU---UUGCUG-CaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 130526 0.7 0.782402
Target:  5'- cGUGGUcccAGAGCgCugcGACGACGUGGCc -3'
miRNA:   3'- -CACCGc--UUUCGgGu--UUGCUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 111678 0.7 0.782402
Target:  5'- -aGcGCGAuGGCCgAGGCGGCGgacgcGGCGa -3'
miRNA:   3'- caC-CGCUuUCGGgUUUGCUGCa----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.