miRNA display CGI


Results 101 - 120 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 5' -54.5 NC_001847.1 + 6427 0.68 0.867936
Target:  5'- -aGGCGAGu-CCCGAgggguuagGCGGCGcGGCGa -3'
miRNA:   3'- caCCGCUUucGGGUU--------UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 74026 0.68 0.860254
Target:  5'- -cGGCGcguGCCgCuGGCgGACGUGGCGc -3'
miRNA:   3'- caCCGCuuuCGG-GuUUG-CUGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 69445 0.68 0.860254
Target:  5'- gGUGGCGGAcggcGGCgCGcgcGCGGCGgcGGCGg -3'
miRNA:   3'- -CACCGCUU----UCGgGUu--UGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 35880 0.68 0.867936
Target:  5'- -cGGCGgcAGCUgGAGuCGGCGgcGGCGg -3'
miRNA:   3'- caCCGCuuUCGGgUUU-GCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 41575 0.68 0.875398
Target:  5'- -aGGCucAGGCCCGugcuuuGCGucgaggccaGCGUGGCGu -3'
miRNA:   3'- caCCGcuUUCGGGUu-----UGC---------UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 74584 0.68 0.875398
Target:  5'- cUGaCGcAGGGCCUgcaGGACGGCGUGGCc -3'
miRNA:   3'- cACcGC-UUUCGGG---UUUGCUGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 31603 0.68 0.867936
Target:  5'- uGUGGCcagcccGAGuCCCGGugGGCG-GGCGc -3'
miRNA:   3'- -CACCGcu----UUC-GGGUUugCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 130943 0.68 0.852359
Target:  5'- -cGGCGAcguuGGGCCCGAggacugcaGCGACGccgGGUc -3'
miRNA:   3'- caCCGCU----UUCGGGUU--------UGCUGCa--CCGc -5'
6351 5' -54.5 NC_001847.1 + 54387 0.69 0.827462
Target:  5'- -cGGCGGGcGGCCgCGGGCGAgGcgGGCGc -3'
miRNA:   3'- caCCGCUU-UCGG-GUUUGCUgCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 89780 0.67 0.881921
Target:  5'- -cGGCGuacGAGGCCgucaucgcgcuggCGAACGcCGUGGCa -3'
miRNA:   3'- caCCGC---UUUCGG-------------GUUUGCuGCACCGc -5'
6351 5' -54.5 NC_001847.1 + 134917 0.68 0.875398
Target:  5'- -gGGCGcGAGGCCCGGGCucgggcccccgGGCGccgggGGCGg -3'
miRNA:   3'- caCCGC-UUUCGGGUUUG-----------CUGCa----CCGC- -5'
6351 5' -54.5 NC_001847.1 + 10851 0.67 0.889641
Target:  5'- -cGGCGcguGGCCgAGgcGCGGCG-GGCGc -3'
miRNA:   3'- caCCGCuu-UCGGgUU--UGCUGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 32141 0.67 0.896412
Target:  5'- -gGGCGccgccgcGCCCGcgcacgccgcGACGGCGUGcGCGg -3'
miRNA:   3'- caCCGCuuu----CGGGU----------UUGCUGCAC-CGC- -5'
6351 5' -54.5 NC_001847.1 + 33529 0.67 0.889641
Target:  5'- --cGCGGAGGCgCCGGGCG-CG-GGCGc -3'
miRNA:   3'- cacCGCUUUCG-GGUUUGCuGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 34494 0.67 0.882635
Target:  5'- -cGGCGAggaugcgagcgAGGCCgacgCGGACGGCGccGGCGa -3'
miRNA:   3'- caCCGCU-----------UUCGG----GUUUGCUGCa-CCGC- -5'
6351 5' -54.5 NC_001847.1 + 77511 0.68 0.875398
Target:  5'- gGUGGCcgGGGAGCUCGcgcgugccugcgAGCGcgaggGCGUGGCGc -3'
miRNA:   3'- -CACCG--CUUUCGGGU------------UUGC-----UGCACCGC- -5'
6351 5' -54.5 NC_001847.1 + 45273 0.67 0.896412
Target:  5'- -cGGCG-AAGCCCGccGCGGCGagccGGCc -3'
miRNA:   3'- caCCGCuUUCGGGUu-UGCUGCa---CCGc -5'
6351 5' -54.5 NC_001847.1 + 34089 0.67 0.896412
Target:  5'- cGUGGCGGccGCCguGGCucGCGcGGCGg -3'
miRNA:   3'- -CACCGCUuuCGGguUUGc-UGCaCCGC- -5'
6351 5' -54.5 NC_001847.1 + 69326 0.68 0.875398
Target:  5'- -gGGCGcgGGCCuCGGGCGcUGcUGGCGg -3'
miRNA:   3'- caCCGCuuUCGG-GUUUGCuGC-ACCGC- -5'
6351 5' -54.5 NC_001847.1 + 3819 0.69 0.827462
Target:  5'- -gGGCGucGGCC---GCGAgCGUGGCGu -3'
miRNA:   3'- caCCGCuuUCGGguuUGCU-GCACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.