miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 135039 0.77 0.248736
Target:  5'- gGGCGCgGGGCGCCGGaccCAGGGGCGGa -3'
miRNA:   3'- -CUGCG-UUUGCGGCCcu-GUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 134986 0.72 0.463012
Target:  5'- aGACGCAGAaccccggccccccgGCCGGGGCccgaGGcccgcGGGCGGGg -3'
miRNA:   3'- -CUGCGUUUg-------------CGGCCCUG----UC-----UCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134944 0.83 0.091348
Target:  5'- gGGCGcCGGGgGCgGGGGCGGGGGCGGGg -3'
miRNA:   3'- -CUGC-GUUUgCGgCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134902 0.77 0.237214
Target:  5'- gGGCGcCGGGCGUCGGGGCGcGAGGCccGGGc -3'
miRNA:   3'- -CUGC-GUUUGCGGCCCUGU-CUCCG--CCC- -5'
6352 3' -58.6 NC_001847.1 + 134832 0.68 0.68448
Target:  5'- aGCGCGAagcuccggcgggGCGCgGGGACGGcgcccGcGCGGGc -3'
miRNA:   3'- cUGCGUU------------UGCGgCCCUGUCu----C-CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134800 0.73 0.415163
Target:  5'- gGGCGCgAAGC-CCGGGAgGGAcGCGGGc -3'
miRNA:   3'- -CUGCG-UUUGcGGCCCUgUCUcCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134763 0.7 0.564319
Target:  5'- aGCGCGguccGGCGCgCGGcGCGcGGGGCGGGc -3'
miRNA:   3'- cUGCGU----UUGCG-GCCcUGU-CUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134207 0.74 0.373667
Target:  5'- cGGCGCGcGCggGCCGaGGGCGGcGGUGGGa -3'
miRNA:   3'- -CUGCGUuUG--CGGC-CCUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 133968 0.66 0.771315
Target:  5'- aGCGagauaAGGCGCCGGGGCuGGGaGCGc- -3'
miRNA:   3'- cUGCg----UUUGCGGCCCUGuCUC-CGCcc -5'
6352 3' -58.6 NC_001847.1 + 133814 0.68 0.69441
Target:  5'- gGGCGC-GGCGCUGGGGCucGGGGaGCcGGa -3'
miRNA:   3'- -CUGCGuUUGCGGCCCUG--UCUC-CGcCC- -5'
6352 3' -58.6 NC_001847.1 + 133586 0.69 0.624307
Target:  5'- aGGCGCGGGCGCgcuauCGGG-C--GGGCGGGc -3'
miRNA:   3'- -CUGCGUUUGCG-----GCCCuGucUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 132792 0.72 0.441379
Target:  5'- cGACGCG---GCCGGGcCGGcgcGGCGGGa -3'
miRNA:   3'- -CUGCGUuugCGGCCCuGUCu--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 132688 0.66 0.78048
Target:  5'- gGACGgGGACG--GGGACGgcGAGGCGGcGg -3'
miRNA:   3'- -CUGCgUUUGCggCCCUGU--CUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 132461 0.67 0.713132
Target:  5'- -cCGCGGGCGgacCCGGaggacggguccgaGGCGGAGGaCGGGg -3'
miRNA:   3'- cuGCGUUUGC---GGCC-------------CUGUCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 132397 0.76 0.286085
Target:  5'- cGGCGCcgccGCGCCGGGcCGGGGGCcGGu -3'
miRNA:   3'- -CUGCGuu--UGCGGCCCuGUCUCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 132327 0.67 0.76203
Target:  5'- cGGCGgAggUGCCGGcGCGGcuGGCGGc -3'
miRNA:   3'- -CUGCgUuuGCGGCCcUGUCu-CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 132183 0.68 0.674508
Target:  5'- cGGCGCugcGCGCCGaGGCggccgccgcgcuGGAGGCGGc -3'
miRNA:   3'- -CUGCGuu-UGCGGCcCUG------------UCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 131930 0.67 0.711172
Target:  5'- cGGCGCGGaggcacguGCGCCGGcGAUGgcggcgacggcggcGAGaGCGGGa -3'
miRNA:   3'- -CUGCGUU--------UGCGGCC-CUGU--------------CUC-CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 131818 0.69 0.634366
Target:  5'- gGAgGCcGGCGCCGGcGGCAGcGGCGc- -3'
miRNA:   3'- -CUgCGuUUGCGGCC-CUGUCuCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 131534 0.67 0.752634
Target:  5'- cGACGCcAugGCCuGGcuGCAGAGcgcgaagcucGCGGGc -3'
miRNA:   3'- -CUGCGuUugCGGcCC--UGUCUC----------CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.