miRNA display CGI


Results 101 - 120 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 105693 0.68 0.803306
Target:  5'- gGCgCUUCg--GCCGCGggcggcgccaCGCCCCa -3'
miRNA:   3'- aCGgGAAGaaaCGGUGCaa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 84864 0.68 0.803306
Target:  5'- aGCCCggCUaggcgGcCCACGUaCGCgCCCa -3'
miRNA:   3'- aCGGGaaGAaa---C-GGUGCAaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 91755 0.68 0.78505
Target:  5'- cGCCCaUCg--GuCCGCGggCGCUCCg -3'
miRNA:   3'- aCGGGaAGaaaC-GGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 36278 0.68 0.78505
Target:  5'- aGCgCCUUCggcUUGCCGCacgaaGUUCGCgCgCCg -3'
miRNA:   3'- aCG-GGAAGa--AACGGUG-----CAAGCGgG-GG- -5'
6352 5' -56 NC_001847.1 + 33757 0.68 0.766236
Target:  5'- uUGCCgg-CggcGCCGCGggCaGCCCCCg -3'
miRNA:   3'- -ACGGgaaGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 18575 0.68 0.766236
Target:  5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3'
miRNA:   3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5'
6352 5' -56 NC_001847.1 + 109962 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5'
6352 5' -56 NC_001847.1 + 120967 0.68 0.812201
Target:  5'- aGCCCcUCccgUGCCuuuagcGCGgcCGCCCCg -3'
miRNA:   3'- aCGGGaAGaa-ACGG------UGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 101257 0.68 0.794252
Target:  5'- cGCCCgcg---GCCACGcgcggcggCGCCUCCu -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 61955 0.68 0.80955
Target:  5'- gGCCCgcgCgggccgacuccgccGCCGCGUcCGCCUCCu -3'
miRNA:   3'- aCGGGaa-Gaaa-----------CGGUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 62148 0.68 0.806883
Target:  5'- cGCCCgcgCUgcgGCCagcucccgcgcgggcGCGUccgCGUCCCCa -3'
miRNA:   3'- aCGGGaa-GAaa-CGG---------------UGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 59647 0.68 0.803306
Target:  5'- cGCUCUUUUgaGCC-CGcUCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAaaCGGuGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 11938 0.68 0.794252
Target:  5'- cGCCCUUagacGCCAUGgaCGCCgCUa -3'
miRNA:   3'- aCGGGAAgaaaCGGUGCaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 16051 0.68 0.785977
Target:  5'- cGCCCcgCggcgGCCGCGgcgccucugcugggCGCCUCCa -3'
miRNA:   3'- aCGGGaaGaaa-CGGUGCaa------------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 120681 0.69 0.759532
Target:  5'- aGCCCggagacccagagGCCGCGgccgCGCaCCCCg -3'
miRNA:   3'- aCGGGaagaaa------CGGUGCaa--GCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 56871 0.69 0.756642
Target:  5'- gGCCCgggCgcgGCCACGg--GCCCgCCg -3'
miRNA:   3'- aCGGGaa-GaaaCGGUGCaagCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 62522 0.69 0.753741
Target:  5'- cGCCCUUU--UGCCcguagccaggggaaGCGgcUGCCCCUu -3'
miRNA:   3'- aCGGGAAGaaACGG--------------UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 106270 0.69 0.727226
Target:  5'- cGCCCacagcgcgUUCUgcgcgGCCAUGg-CGUCCCCg -3'
miRNA:   3'- aCGGG--------AAGAaa---CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 29915 0.69 0.756642
Target:  5'- cGCCCgcCUgUGCC-CGcgCGCCCgCg -3'
miRNA:   3'- aCGGGaaGAaACGGuGCaaGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 130271 0.69 0.727226
Target:  5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3'
miRNA:   3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.