miRNA display CGI


Results 81 - 100 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 105565 0.68 0.766236
Target:  5'- gGCCCggCgcgGCgGCGccggcgccggCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 18575 0.68 0.766236
Target:  5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3'
miRNA:   3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5'
6352 5' -56 NC_001847.1 + 89010 0.68 0.773824
Target:  5'- gGCCCgcuucuaccgaaUCUUUGCCGacauCGcccaGCCCCCg -3'
miRNA:   3'- aCGGGa-----------AGAAACGGU----GCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 62579 0.68 0.775708
Target:  5'- uUGCUCggCUUUGCguuugcccCGCGgcgaUCGCCCCg -3'
miRNA:   3'- -ACGGGaaGAAACG--------GUGCa---AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 132715 0.68 0.775708
Target:  5'- gGCCCUgccggccGCCGCGgggGCCCCUc -3'
miRNA:   3'- aCGGGAagaaa--CGGUGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 60124 0.68 0.775708
Target:  5'- gGCgCCUUC--UGCC-CGcUgGCCCCCc -3'
miRNA:   3'- aCG-GGAAGaaACGGuGCaAgCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36278 0.68 0.78505
Target:  5'- aGCgCCUUCggcUUGCCGCacgaaGUUCGCgCgCCg -3'
miRNA:   3'- aCG-GGAAGa--AACGGUG-----CAAGCGgG-GG- -5'
6352 5' -56 NC_001847.1 + 21958 0.68 0.78505
Target:  5'- cGUCCgggcgCUggGCCGCGgcgccggUUGCCgCCCg -3'
miRNA:   3'- aCGGGaa---GAaaCGGUGCa------AGCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 91755 0.68 0.78505
Target:  5'- cGCCCaUCg--GuCCGCGggCGCUCCg -3'
miRNA:   3'- aCGGGaAGaaaC-GGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 16051 0.68 0.785977
Target:  5'- cGCCCcgCggcgGCCGCGgcgccucugcugggCGCCUCCa -3'
miRNA:   3'- aCGGGaaGaaa-CGGUGCaa------------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101257 0.68 0.794252
Target:  5'- cGCCCgcg---GCCACGcgcggcggCGCCUCCu -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 11938 0.68 0.794252
Target:  5'- cGCCCUUagacGCCAUGgaCGCCgCUa -3'
miRNA:   3'- aCGGGAAgaaaCGGUGCaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 84864 0.68 0.803306
Target:  5'- aGCCCggCUaggcgGcCCACGUaCGCgCCCa -3'
miRNA:   3'- aCGGGaaGAaa---C-GGUGCAaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 109962 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5'
6352 5' -56 NC_001847.1 + 7149 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5'
6352 5' -56 NC_001847.1 + 116152 0.68 0.803306
Target:  5'- gGCCCgaggcgCUggcgGCCGCGggCGCCgCg -3'
miRNA:   3'- aCGGGaa----GAaa--CGGUGCaaGCGGgGg -5'
6352 5' -56 NC_001847.1 + 105693 0.68 0.803306
Target:  5'- gGCgCUUCg--GCCGCGggcggcgccaCGCCCCa -3'
miRNA:   3'- aCGgGAAGaaaCGGUGCaa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 59647 0.68 0.803306
Target:  5'- cGCUCUUUUgaGCC-CGcUCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAaaCGGuGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 62148 0.68 0.806883
Target:  5'- cGCCCgcgCUgcgGCCagcucccgcgcgggcGCGUccgCGUCCCCa -3'
miRNA:   3'- aCGGGaa-GAaa-CGG---------------UGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 61955 0.68 0.80955
Target:  5'- gGCCCgcgCgggccgacuccgccGCCGCGUcCGCCUCCu -3'
miRNA:   3'- aCGGGaa-Gaaa-----------CGGUGCAaGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.