miRNA display CGI


Results 141 - 160 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 38649 0.67 0.854023
Target:  5'- aUGCCCgcCgcgUUGCCGUGgcgaCGCCCgCCg -3'
miRNA:   3'- -ACGGGaaGa--AACGGUGCaa--GCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 101623 0.67 0.854023
Target:  5'- cGCCCggCgccuCCGCGgcggCGCCCgCCg -3'
miRNA:   3'- aCGGGaaGaaacGGUGCaa--GCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 28372 0.67 0.854023
Target:  5'- cGCCC-UCgccGCCggagACGg-CGCCCCCc -3'
miRNA:   3'- aCGGGaAGaaaCGG----UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 81504 0.67 0.854023
Target:  5'- gUGCCCggUCUUUGUCGCGgaCGCg--- -3'
miRNA:   3'- -ACGGGa-AGAAACGGUGCaaGCGgggg -5'
6352 5' -56 NC_001847.1 + 117255 0.67 0.854023
Target:  5'- cGCCCUaauccugcUCUgcgggGCCGcCGUUuuggggCGCCCCg -3'
miRNA:   3'- aCGGGA--------AGAaa---CGGU-GCAA------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 110375 0.67 0.854023
Target:  5'- cGCUCUUCgacGaCCGCGcgUCGCaCCUCa -3'
miRNA:   3'- aCGGGAAGaaaC-GGUGCa-AGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 122550 0.66 0.861803
Target:  5'- gGCCCUUCcgacaGCCGCucgUCGCgCUCu -3'
miRNA:   3'- aCGGGAAGaaa--CGGUGca-AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 100398 0.66 0.861803
Target:  5'- cGCCag-CUcgGCCGCGUcgaaggcggaguUCGCCUCg -3'
miRNA:   3'- aCGGgaaGAaaCGGUGCA------------AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 51168 0.66 0.861803
Target:  5'- gGCgCCUUCgc-GCgguacgguaCACGUcucCGCCCCCg -3'
miRNA:   3'- aCG-GGAAGaaaCG---------GUGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 65649 0.66 0.861803
Target:  5'- cGCCaa-Cg--GCCGCGUgcgCGCCCgCa -3'
miRNA:   3'- aCGGgaaGaaaCGGUGCAa--GCGGGgG- -5'
6352 5' -56 NC_001847.1 + 26508 0.66 0.861803
Target:  5'- gGCCaCUUC--UGCaGCG-UCGCCCgCCg -3'
miRNA:   3'- aCGG-GAAGaaACGgUGCaAGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 17797 0.66 0.867875
Target:  5'- gGCUUUgCUcgGCCGCGgggggcgaggcCGCCCCCc -3'
miRNA:   3'- aCGGGAaGAaaCGGUGCaa---------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 80754 0.66 0.869372
Target:  5'- cGCCCgccUCgc--CCGCGgcCGCCCgCCg -3'
miRNA:   3'- aCGGGa--AGaaacGGUGCaaGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 54939 0.66 0.869372
Target:  5'- cGCCCUgcgCUUcGCgGCGcaccCGCCCgCa -3'
miRNA:   3'- aCGGGAa--GAAaCGgUGCaa--GCGGGgG- -5'
6352 5' -56 NC_001847.1 + 85432 0.66 0.869372
Target:  5'- cGCCCac--UUGCacggGCGccgCGCCCCCg -3'
miRNA:   3'- aCGGGaagaAACGg---UGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 46790 0.66 0.869372
Target:  5'- cGCCCgcgc--GCCccuCGUUC-CCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGu--GCAAGcGGGGG- -5'
6352 5' -56 NC_001847.1 + 55487 0.66 0.869372
Target:  5'- cUGCCCUgCUauggGCgACGUggGCCCUg -3'
miRNA:   3'- -ACGGGAaGAaa--CGgUGCAagCGGGGg -5'
6352 5' -56 NC_001847.1 + 110793 0.66 0.874542
Target:  5'- gGCCCUgcUCgg-GCCcccccuccacuuggACa-UCGCCCCCg -3'
miRNA:   3'- aCGGGA--AGaaaCGG--------------UGcaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 48712 0.66 0.876724
Target:  5'- cUGCCCgc----GCCGCGcagCGCCgCCa -3'
miRNA:   3'- -ACGGGaagaaaCGGUGCaa-GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 75077 0.66 0.876724
Target:  5'- uUGCCCUccgugucgcucUCUUcgcGCCGCc-UCGCgCCCg -3'
miRNA:   3'- -ACGGGA-----------AGAAa--CGGUGcaAGCGgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.