miRNA display CGI


Results 101 - 120 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 101257 0.68 0.794252
Target:  5'- cGCCCgcg---GCCACGcgcggcggCGCCUCCu -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 11938 0.68 0.794252
Target:  5'- cGCCCUUagacGCCAUGgaCGCCgCUa -3'
miRNA:   3'- aCGGGAAgaaaCGGUGCaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 16051 0.68 0.785977
Target:  5'- cGCCCcgCggcgGCCGCGgcgccucugcugggCGCCUCCa -3'
miRNA:   3'- aCGGGaaGaaa-CGGUGCaa------------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36278 0.68 0.78505
Target:  5'- aGCgCCUUCggcUUGCCGCacgaaGUUCGCgCgCCg -3'
miRNA:   3'- aCG-GGAAGa--AACGGUG-----CAAGCGgG-GG- -5'
6352 5' -56 NC_001847.1 + 91755 0.68 0.78505
Target:  5'- cGCCCaUCg--GuCCGCGggCGCUCCg -3'
miRNA:   3'- aCGGGaAGaaaC-GGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 21958 0.68 0.78505
Target:  5'- cGUCCgggcgCUggGCCGCGgcgccggUUGCCgCCCg -3'
miRNA:   3'- aCGGGaa---GAaaCGGUGCa------AGCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 132715 0.68 0.775708
Target:  5'- gGCCCUgccggccGCCGCGgggGCCCCUc -3'
miRNA:   3'- aCGGGAagaaa--CGGUGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 62579 0.68 0.775708
Target:  5'- uUGCUCggCUUUGCguuugcccCGCGgcgaUCGCCCCg -3'
miRNA:   3'- -ACGGGaaGAAACG--------GUGCa---AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 60124 0.68 0.775708
Target:  5'- gGCgCCUUC--UGCC-CGcUgGCCCCCc -3'
miRNA:   3'- aCG-GGAAGaaACGGuGCaAgCGGGGG- -5'
6352 5' -56 NC_001847.1 + 89010 0.68 0.773824
Target:  5'- gGCCCgcuucuaccgaaUCUUUGCCGacauCGcccaGCCCCCg -3'
miRNA:   3'- aCGGGa-----------AGAAACGGU----GCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 105565 0.68 0.766236
Target:  5'- gGCCCggCgcgGCgGCGccggcgccggCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 33757 0.68 0.766236
Target:  5'- uUGCCgg-CggcGCCGCGggCaGCCCCCg -3'
miRNA:   3'- -ACGGgaaGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 18575 0.68 0.766236
Target:  5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3'
miRNA:   3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5'
6352 5' -56 NC_001847.1 + 2752 0.68 0.766236
Target:  5'- gGCCCggCgcgGCgGCGccggcgccggCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 120681 0.69 0.759532
Target:  5'- aGCCCggagacccagagGCCGCGgccgCGCaCCCCg -3'
miRNA:   3'- aCGGGaagaaa------CGGUGCaa--GCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 52086 0.69 0.756642
Target:  5'- cGCUCUUCg--GCCGCGccgCGgCCCa -3'
miRNA:   3'- aCGGGAAGaaaCGGUGCaa-GCgGGGg -5'
6352 5' -56 NC_001847.1 + 56871 0.69 0.756642
Target:  5'- gGCCCgggCgcgGCCACGg--GCCCgCCg -3'
miRNA:   3'- aCGGGaa-GaaaCGGUGCaagCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 29915 0.69 0.756642
Target:  5'- cGCCCgcCUgUGCC-CGcgCGCCCgCg -3'
miRNA:   3'- aCGGGaaGAaACGGuGCaaGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 62522 0.69 0.753741
Target:  5'- cGCCCUUU--UGCCcguagccaggggaaGCGgcUGCCCCUu -3'
miRNA:   3'- aCGGGAAGaaACGG--------------UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 67313 0.69 0.737128
Target:  5'- gGCCCUUUUUggGCCGCGcggaCGCCgCg -3'
miRNA:   3'- aCGGGAAGAAa-CGGUGCaa--GCGGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.