miRNA display CGI


Results 141 - 160 of 192 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 134023 0.7 0.666394
Target:  5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3'
miRNA:   3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 120118 0.7 0.666394
Target:  5'- cGCCCggCg--GCCGCGgcucgcgCGgCCCCa -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaa-----GCgGGGG- -5'
6352 5' -56 NC_001847.1 + 31210 0.7 0.666394
Target:  5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3'
miRNA:   3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 66285 0.7 0.666394
Target:  5'- gGCCCggCgcacgccGCCGCGcUCGCgCCCg -3'
miRNA:   3'- aCGGGaaGaaa----CGGUGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 72343 0.7 0.656104
Target:  5'- gGCCCggCUUgUG-CGCGaucUCGCCCCCc -3'
miRNA:   3'- aCGGGaaGAA-ACgGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 31537 0.7 0.656104
Target:  5'- gUGCCCcaggCgUUUGUCGCGcgcaUGCCCCCg -3'
miRNA:   3'- -ACGGGaa--G-AAACGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 94753 0.71 0.645794
Target:  5'- gGCgCgUCUUgGCCGgGgccgUCGCCCCCc -3'
miRNA:   3'- aCGgGaAGAAaCGGUgCa---AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 90691 0.71 0.635473
Target:  5'- cUGUCUcgCgcgcgUGCCGCGcgccgCGCCCCCg -3'
miRNA:   3'- -ACGGGaaGaa---ACGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 28970 0.71 0.635473
Target:  5'- aGCCUgcg---GCgCGCGUaCGCCCCCa -3'
miRNA:   3'- aCGGGaagaaaCG-GUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131783 0.71 0.635473
Target:  5'- aGCCUgcg---GCgCGCGUaCGCCCCCa -3'
miRNA:   3'- aCGGGaagaaaCG-GUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 1349 0.71 0.62515
Target:  5'- cGCCCUgcgCg--GCCAUGUccUUGCgCCCg -3'
miRNA:   3'- aCGGGAa--GaaaCGGUGCA--AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 66928 0.71 0.62515
Target:  5'- gGCCCcgCcgcgGCC-CGUgCGCCCCCu -3'
miRNA:   3'- aCGGGaaGaaa-CGGuGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 104162 0.71 0.62515
Target:  5'- cGCCCUgcgCg--GCCAUGUccUUGCgCCCg -3'
miRNA:   3'- aCGGGAa--GaaaCGGUGCA--AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 54090 0.71 0.614832
Target:  5'- gGCCCcgCccacGcCCACG-UCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaa-C-GGUGCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 27338 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 31373 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 15585 0.71 0.614832
Target:  5'- cUGCCCgcagagUCUg-GCCGCG--CGCCCCUu -3'
miRNA:   3'- -ACGGGa-----AGAaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134186 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 130151 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 15613 0.71 0.614832
Target:  5'- uUGCCCagcCUgccgGCCGCGgccgcCGCCCCUc -3'
miRNA:   3'- -ACGGGaa-GAaa--CGGUGCaa---GCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.