miRNA display CGI


Results 81 - 100 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 59647 0.68 0.803306
Target:  5'- cGCUCUUUUgaGCC-CGcUCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAaaCGGuGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 60124 0.68 0.775708
Target:  5'- gGCgCCUUC--UGCC-CGcUgGCCCCCc -3'
miRNA:   3'- aCG-GGAAGaaACGGuGCaAgCGGGGG- -5'
6352 5' -56 NC_001847.1 + 60655 0.66 0.897429
Target:  5'- gUGCgCgcg---GCCGCGUccgCGCCCUCg -3'
miRNA:   3'- -ACGgGaagaaaCGGUGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 61955 0.68 0.80955
Target:  5'- gGCCCgcgCgggccgacuccgccGCCGCGUcCGCCUCCu -3'
miRNA:   3'- aCGGGaa-Gaaa-----------CGGUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 62148 0.68 0.806883
Target:  5'- cGCCCgcgCUgcgGCCagcucccgcgcgggcGCGUccgCGUCCCCa -3'
miRNA:   3'- aCGGGaa-GAaa-CGG---------------UGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 62522 0.69 0.753741
Target:  5'- cGCCCUUU--UGCCcguagccaggggaaGCGgcUGCCCCUu -3'
miRNA:   3'- aCGGGAAGaaACGG--------------UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 62579 0.68 0.775708
Target:  5'- uUGCUCggCUUUGCguuugcccCGCGgcgaUCGCCCCg -3'
miRNA:   3'- -ACGGGaaGAAACG--------GUGCa---AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 64065 0.7 0.676656
Target:  5'- cGCCCUggccgGCCGCc-UCGCCgCCCu -3'
miRNA:   3'- aCGGGAagaaaCGGUGcaAGCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 64428 0.78 0.266927
Target:  5'- cUGUCCUcgCgcucGCCGCGggCGCCCCCg -3'
miRNA:   3'- -ACGGGAa-Gaaa-CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 65649 0.66 0.861803
Target:  5'- cGCCaa-Cg--GCCGCGUgcgCGCCCgCa -3'
miRNA:   3'- aCGGgaaGaaaCGGUGCAa--GCGGGgG- -5'
6352 5' -56 NC_001847.1 + 66285 0.7 0.666394
Target:  5'- gGCCCggCgcacgccGCCGCGcUCGCgCCCg -3'
miRNA:   3'- aCGGGaaGaaa----CGGUGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 66324 0.72 0.543385
Target:  5'- gGCCCUUUUgcGUCAuUGUUC-CCCCCg -3'
miRNA:   3'- aCGGGAAGAaaCGGU-GCAAGcGGGGG- -5'
6352 5' -56 NC_001847.1 + 66675 0.67 0.82093
Target:  5'- aUGCCCgUCUUcaacccucGCCuccacaGCGggCGCUCCCg -3'
miRNA:   3'- -ACGGGaAGAAa-------CGG------UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 66928 0.71 0.62515
Target:  5'- gGCCCcgCcgcgGCC-CGUgCGCCCCCu -3'
miRNA:   3'- aCGGGaaGaaa-CGGuGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 67061 0.7 0.686881
Target:  5'- cGCUCgcgcc-GCgGCGUUCGCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGgUGCAAGCGGGGg -5'
6352 5' -56 NC_001847.1 + 67313 0.69 0.737128
Target:  5'- gGCCCUUUUUggGCCGCGcggaCGCCgCg -3'
miRNA:   3'- aCGGGAAGAAa-CGGUGCaa--GCGGgGg -5'
6352 5' -56 NC_001847.1 + 68147 0.66 0.876724
Target:  5'- cUGcCCCUUCUccggcGCCGCGccgcaGCCCgCCu -3'
miRNA:   3'- -AC-GGGAAGAaa---CGGUGCaag--CGGG-GG- -5'
6352 5' -56 NC_001847.1 + 71284 0.66 0.897429
Target:  5'- aGCCg-UCgc-GCCAUG--CGCCCCCc -3'
miRNA:   3'- aCGGgaAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 71724 0.75 0.428665
Target:  5'- gGCCCgcCggcGCCGCGUgCGCUCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 72343 0.7 0.656104
Target:  5'- gGCCCggCUUgUG-CGCGaucUCGCCCCCc -3'
miRNA:   3'- aCGGGaaGAA-ACgGUGCa--AGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.