miRNA display CGI


Results 101 - 120 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 74299 0.75 0.41094
Target:  5'- cGCCCUggcgccgCgcagcGCCGCGggCGCCCCUc -3'
miRNA:   3'- aCGGGAa------Gaaa--CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 75009 0.66 0.897429
Target:  5'- cGUUCUUCggcGCCGa---CGCCCCCu -3'
miRNA:   3'- aCGGGAAGaaaCGGUgcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 75077 0.66 0.876724
Target:  5'- uUGCCCUccgugucgcucUCUUcgcGCCGCc-UCGCgCCCg -3'
miRNA:   3'- -ACGGGA-----------AGAAa--CGGUGcaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 75222 0.69 0.713227
Target:  5'- cGCCCUUCcgccggcucucGCCGCGcgcgcgCGCCgCCCu -3'
miRNA:   3'- aCGGGAAGaaa--------CGGUGCaa----GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 75787 0.66 0.897429
Target:  5'- cGCCgCUgccgccGCCGCuc-CGCCCCCg -3'
miRNA:   3'- aCGG-GAagaaa-CGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 78303 0.67 0.827789
Target:  5'- gUGCUCgggcggCUggGCCGCccccuccccgCGCCCCCa -3'
miRNA:   3'- -ACGGGaa----GAaaCGGUGcaa-------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 78336 0.69 0.735155
Target:  5'- gGCCCggCUUgggcGCCGCGgcggcgaacaGCCCCUc -3'
miRNA:   3'- aCGGGaaGAAa---CGGUGCaag-------CGGGGG- -5'
6352 5' -56 NC_001847.1 + 80577 0.67 0.846039
Target:  5'- aGCCCgcggg-GCCGuCGUccuccgcgcCGCCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGU-GCAa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 80685 0.66 0.883854
Target:  5'- cGCCCUccuccUCgg-GCU-CGUcccCGCCCCCc -3'
miRNA:   3'- aCGGGA-----AGaaaCGGuGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 80754 0.66 0.869372
Target:  5'- cGCCCgccUCgc--CCGCGgcCGCCCgCCg -3'
miRNA:   3'- aCGGGa--AGaaacGGUGCaaGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 81504 0.67 0.854023
Target:  5'- gUGCCCggUCUUUGUCGCGgaCGCg--- -3'
miRNA:   3'- -ACGGGa-AGAAACGGUGCaaGCGgggg -5'
6352 5' -56 NC_001847.1 + 83218 0.67 0.846039
Target:  5'- cGCCCcg----GCCACGaUCGCCgugagCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaAGCGG-----GGG- -5'
6352 5' -56 NC_001847.1 + 83305 0.66 0.890757
Target:  5'- cGCCag-CUcgGCCACGUU-GCCCg- -3'
miRNA:   3'- aCGGgaaGAaaCGGUGCAAgCGGGgg -5'
6352 5' -56 NC_001847.1 + 84475 0.66 0.890757
Target:  5'- aGCCCgcag--GgCACG-UCGCCCuCCa -3'
miRNA:   3'- aCGGGaagaaaCgGUGCaAGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 84864 0.68 0.803306
Target:  5'- aGCCCggCUaggcgGcCCACGUaCGCgCCCa -3'
miRNA:   3'- aCGGGaaGAaa---C-GGUGCAaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 84898 0.66 0.883854
Target:  5'- cGUCCagCUUcGCCGCGUcgucugccgCGCCCUg -3'
miRNA:   3'- aCGGGaaGAAaCGGUGCAa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 85432 0.66 0.869372
Target:  5'- cGCCCac--UUGCacggGCGccgCGCCCCCg -3'
miRNA:   3'- aCGGGaagaAACGg---UGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 87059 0.7 0.69706
Target:  5'- cUGCagCUUCcgcGCgGCGUgCGCCCCCg -3'
miRNA:   3'- -ACGg-GAAGaaaCGgUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 88227 0.67 0.82093
Target:  5'- aGCCCgg----GCC-CGacgCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGuGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 88486 0.67 0.843605
Target:  5'- cGCCCUaCUcUGCCgaauggacgacgGCGgcugcgacgccaagUUCGCCCUCg -3'
miRNA:   3'- aCGGGAaGAaACGG------------UGC--------------AAGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.