miRNA display CGI


Results 121 - 140 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 89010 0.68 0.773824
Target:  5'- gGCCCgcuucuaccgaaUCUUUGCCGacauCGcccaGCCCCCg -3'
miRNA:   3'- aCGGGa-----------AGAAACGGU----GCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 89638 0.67 0.837857
Target:  5'- cGCCCggCg--GCgGCGccCGCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 90691 0.71 0.635473
Target:  5'- cUGUCUcgCgcgcgUGCCGCGcgccgCGCCCCCg -3'
miRNA:   3'- -ACGGGaaGaa---ACGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 90850 0.67 0.854023
Target:  5'- gGCCCgcCgc-GCCGCGccgCGCCgCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaa-GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 91142 0.67 0.837857
Target:  5'- gGCCCUcaaaacuauucUCgcugGCCACGcgCGCCUUa -3'
miRNA:   3'- aCGGGA-----------AGaaa-CGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 91755 0.68 0.78505
Target:  5'- cGCCCaUCg--GuCCGCGggCGCUCCg -3'
miRNA:   3'- aCGGGaAGaaaC-GGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 91890 0.7 0.676656
Target:  5'- gUGCCCccCgggcGCCGCGccgcccgcgCGCCCCCa -3'
miRNA:   3'- -ACGGGaaGaaa-CGGUGCaa-------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 92127 0.69 0.737128
Target:  5'- cGCaCCUUUUcggcgGCC-CGgcgCGCCCCCc -3'
miRNA:   3'- aCG-GGAAGAaa---CGGuGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 92586 0.67 0.853234
Target:  5'- cGCCgaggaggacgcgGCCGCGUccUCGCCCUCa -3'
miRNA:   3'- aCGGgaagaaa-----CGGUGCA--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 94753 0.71 0.645794
Target:  5'- gGCgCgUCUUgGCCGgGgccgUCGCCCCCc -3'
miRNA:   3'- aCGgGaAGAAaCGGUgCa---AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 94965 0.73 0.523424
Target:  5'- gGCCgUUCc--GCCGCGcgCaGCCCCCg -3'
miRNA:   3'- aCGGgAAGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 98186 0.69 0.727226
Target:  5'- cGCCCgcgCUg-GCCGCa---GCCCCCg -3'
miRNA:   3'- aCGGGaa-GAaaCGGUGcaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 98359 0.66 0.883854
Target:  5'- aUGUCC-UCgggUGCCGCGUaaCGCgUCCa -3'
miRNA:   3'- -ACGGGaAGaa-ACGGUGCAa-GCGgGGG- -5'
6352 5' -56 NC_001847.1 + 99859 0.76 0.36868
Target:  5'- cGCCCacgcaccgUUCUUaUGCCAgCGUUUGCaCCCCg -3'
miRNA:   3'- aCGGG--------AAGAA-ACGGU-GCAAGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 99961 0.71 0.594243
Target:  5'- cGCuCCUccUCgaagGCCGCGU--GCCCCCg -3'
miRNA:   3'- aCG-GGA--AGaaa-CGGUGCAagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 100398 0.66 0.861803
Target:  5'- cGCCag-CUcgGCCGCGUcgaaggcggaguUCGCCUCg -3'
miRNA:   3'- aCGGgaaGAaaCGGUGCA------------AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 100471 0.66 0.876724
Target:  5'- cGCuCCUcCUgccGCUgcGCGgcCGCCCCCu -3'
miRNA:   3'- aCG-GGAaGAaa-CGG--UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101257 0.68 0.794252
Target:  5'- cGCCCgcg---GCCACGcgcggcggCGCCUCCu -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101571 0.71 0.594243
Target:  5'- aGCCCgg----GCCGCGccagaCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101623 0.67 0.854023
Target:  5'- cGCCCggCgccuCCGCGgcggCGCCCgCCg -3'
miRNA:   3'- aCGGGaaGaaacGGUGCaa--GCGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.