miRNA display CGI


Results 161 - 180 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 110375 0.67 0.854023
Target:  5'- cGCUCUUCgacGaCCGCGcgUCGCaCCUCa -3'
miRNA:   3'- aCGGGAAGaaaC-GGUGCa-AGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 110793 0.66 0.874542
Target:  5'- gGCCCUgcUCgg-GCCcccccuccacuuggACa-UCGCCCCCg -3'
miRNA:   3'- aCGGGA--AGaaaCGG--------------UGcaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 113028 0.69 0.727226
Target:  5'- gGCCCagggCgc-GCC-CGcugUCGCCCCCg -3'
miRNA:   3'- aCGGGaa--GaaaCGGuGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 115946 0.71 0.594243
Target:  5'- cGCCg-UCUggGCCACagacccCGCCCCCg -3'
miRNA:   3'- aCGGgaAGAaaCGGUGcaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 116152 0.68 0.803306
Target:  5'- gGCCCgaggcgCUggcgGCCGCGggCGCCgCg -3'
miRNA:   3'- aCGGGaa----GAaa--CGGUGCaaGCGGgGg -5'
6352 5' -56 NC_001847.1 + 117255 0.67 0.854023
Target:  5'- cGCCCUaauccugcUCUgcgggGCCGcCGUUuuggggCGCCCCg -3'
miRNA:   3'- aCGGGA--------AGAaa---CGGU-GCAA------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 118493 0.74 0.456077
Target:  5'- cGCCCgcgcc-GCCACGUUCGCcaagagcaaCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCAAGCG---------GGGG- -5'
6352 5' -56 NC_001847.1 + 118937 0.7 0.707183
Target:  5'- cGCCCUUCgcagacgGCCGCGagcaGCCCg- -3'
miRNA:   3'- aCGGGAAGaaa----CGGUGCaag-CGGGgg -5'
6352 5' -56 NC_001847.1 + 120118 0.7 0.666394
Target:  5'- cGCCCggCg--GCCGCGgcucgcgCGgCCCCa -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaa-----GCgGGGG- -5'
6352 5' -56 NC_001847.1 + 120394 0.66 0.883854
Target:  5'- cGCCgcgggcgacugCUUCguuaUGCUgcagacgaccGCGUUCGCCUCCu -3'
miRNA:   3'- aCGG-----------GAAGaa--ACGG----------UGCAAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 120565 0.66 0.890757
Target:  5'- cGUCCUUagagaGCCGCG--CGCCCgCCa -3'
miRNA:   3'- aCGGGAAgaaa-CGGUGCaaGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 120681 0.69 0.759532
Target:  5'- aGCCCggagacccagagGCCGCGgccgCGCaCCCCg -3'
miRNA:   3'- aCGGGaagaaa------CGGUGCaa--GCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 120967 0.68 0.812201
Target:  5'- aGCCCcUCccgUGCCuuuagcGCGgcCGCCCCg -3'
miRNA:   3'- aCGGGaAGaa-ACGG------UGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 122550 0.66 0.861803
Target:  5'- gGCCCUUCcgacaGCCGCucgUCGCgCUCu -3'
miRNA:   3'- aCGGGAAGaaa--CGGUGca-AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 122649 0.67 0.837857
Target:  5'- gGCCCggguUCUUgGCCGCcccCGCCgCCa -3'
miRNA:   3'- aCGGGa---AGAAaCGGUGcaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 124291 0.66 0.890757
Target:  5'- cGCCCgccgcgcCUcgGCCACG--CGCCgCCg -3'
miRNA:   3'- aCGGGaa-----GAaaCGGUGCaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 126643 1.13 0.001418
Target:  5'- gUGCCCUUCUUUGCCACGUUCGCCCCCa -3'
miRNA:   3'- -ACGGGAAGAAACGGUGCAAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 126667 0.66 0.897429
Target:  5'- cGCCCccg---GCCgaGCGc-CGCCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGG--UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 127061 0.72 0.543385
Target:  5'- cGCCgaUCUc-GCCGCGgcggUGCCCCCc -3'
miRNA:   3'- aCGGgaAGAaaCGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 127402 0.67 0.837857
Target:  5'- uUGCCCUg----GCCGC---CGCCUCCg -3'
miRNA:   3'- -ACGGGAagaaaCGGUGcaaGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.