miRNA display CGI


Results 61 - 80 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 98186 0.69 0.727226
Target:  5'- cGCCCgcgCUg-GCCGCa---GCCCCCg -3'
miRNA:   3'- aCGGGaa-GAaaCGGUGcaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 94965 0.73 0.523424
Target:  5'- gGCCgUUCc--GCCGCGcgCaGCCCCCg -3'
miRNA:   3'- aCGGgAAGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 94753 0.71 0.645794
Target:  5'- gGCgCgUCUUgGCCGgGgccgUCGCCCCCc -3'
miRNA:   3'- aCGgGaAGAAaCGGUgCa---AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 92586 0.67 0.853234
Target:  5'- cGCCgaggaggacgcgGCCGCGUccUCGCCCUCa -3'
miRNA:   3'- aCGGgaagaaa-----CGGUGCA--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 92127 0.69 0.737128
Target:  5'- cGCaCCUUUUcggcgGCC-CGgcgCGCCCCCc -3'
miRNA:   3'- aCG-GGAAGAaa---CGGuGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 91890 0.7 0.676656
Target:  5'- gUGCCCccCgggcGCCGCGccgcccgcgCGCCCCCa -3'
miRNA:   3'- -ACGGGaaGaaa-CGGUGCaa-------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 91755 0.68 0.78505
Target:  5'- cGCCCaUCg--GuCCGCGggCGCUCCg -3'
miRNA:   3'- aCGGGaAGaaaC-GGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 91142 0.67 0.837857
Target:  5'- gGCCCUcaaaacuauucUCgcugGCCACGcgCGCCUUa -3'
miRNA:   3'- aCGGGA-----------AGaaa-CGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 90850 0.67 0.854023
Target:  5'- gGCCCgcCgc-GCCGCGccgCGCCgCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaa-GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 90691 0.71 0.635473
Target:  5'- cUGUCUcgCgcgcgUGCCGCGcgccgCGCCCCCg -3'
miRNA:   3'- -ACGGGaaGaa---ACGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 89638 0.67 0.837857
Target:  5'- cGCCCggCg--GCgGCGccCGCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 89010 0.68 0.773824
Target:  5'- gGCCCgcuucuaccgaaUCUUUGCCGacauCGcccaGCCCCCg -3'
miRNA:   3'- aCGGGa-----------AGAAACGGU----GCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 88486 0.67 0.843605
Target:  5'- cGCCCUaCUcUGCCgaauggacgacgGCGgcugcgacgccaagUUCGCCCUCg -3'
miRNA:   3'- aCGGGAaGAaACGG------------UGC--------------AAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 88227 0.67 0.82093
Target:  5'- aGCCCgg----GCC-CGacgCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGuGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 87059 0.7 0.69706
Target:  5'- cUGCagCUUCcgcGCgGCGUgCGCCCCCg -3'
miRNA:   3'- -ACGg-GAAGaaaCGgUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 85432 0.66 0.869372
Target:  5'- cGCCCac--UUGCacggGCGccgCGCCCCCg -3'
miRNA:   3'- aCGGGaagaAACGg---UGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 84898 0.66 0.883854
Target:  5'- cGUCCagCUUcGCCGCGUcgucugccgCGCCCUg -3'
miRNA:   3'- aCGGGaaGAAaCGGUGCAa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 84864 0.68 0.803306
Target:  5'- aGCCCggCUaggcgGcCCACGUaCGCgCCCa -3'
miRNA:   3'- aCGGGaaGAaa---C-GGUGCAaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 84475 0.66 0.890757
Target:  5'- aGCCCgcag--GgCACG-UCGCCCuCCa -3'
miRNA:   3'- aCGGGaagaaaCgGUGCaAGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 83305 0.66 0.890757
Target:  5'- cGCCag-CUcgGCCACGUU-GCCCg- -3'
miRNA:   3'- aCGGgaaGAaaCGGUGCAAgCGGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.