miRNA display CGI


Results 81 - 100 of 192 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 83218 0.67 0.846039
Target:  5'- cGCCCcg----GCCACGaUCGCCgugagCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaAGCGG-----GGG- -5'
6352 5' -56 NC_001847.1 + 81504 0.67 0.854023
Target:  5'- gUGCCCggUCUUUGUCGCGgaCGCg--- -3'
miRNA:   3'- -ACGGGa-AGAAACGGUGCaaGCGgggg -5'
6352 5' -56 NC_001847.1 + 80754 0.66 0.869372
Target:  5'- cGCCCgccUCgc--CCGCGgcCGCCCgCCg -3'
miRNA:   3'- aCGGGa--AGaaacGGUGCaaGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 80685 0.66 0.883854
Target:  5'- cGCCCUccuccUCgg-GCU-CGUcccCGCCCCCc -3'
miRNA:   3'- aCGGGA-----AGaaaCGGuGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 80577 0.67 0.846039
Target:  5'- aGCCCgcggg-GCCGuCGUccuccgcgcCGCCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGU-GCAa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 78336 0.69 0.735155
Target:  5'- gGCCCggCUUgggcGCCGCGgcggcgaacaGCCCCUc -3'
miRNA:   3'- aCGGGaaGAAa---CGGUGCaag-------CGGGGG- -5'
6352 5' -56 NC_001847.1 + 78303 0.67 0.827789
Target:  5'- gUGCUCgggcggCUggGCCGCccccuccccgCGCCCCCa -3'
miRNA:   3'- -ACGGGaa----GAaaCGGUGcaa-------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 75787 0.66 0.897429
Target:  5'- cGCCgCUgccgccGCCGCuc-CGCCCCCg -3'
miRNA:   3'- aCGG-GAagaaa-CGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 75222 0.69 0.713227
Target:  5'- cGCCCUUCcgccggcucucGCCGCGcgcgcgCGCCgCCCu -3'
miRNA:   3'- aCGGGAAGaaa--------CGGUGCaa----GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 75077 0.66 0.876724
Target:  5'- uUGCCCUccgugucgcucUCUUcgcGCCGCc-UCGCgCCCg -3'
miRNA:   3'- -ACGGGA-----------AGAAa--CGGUGcaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 75009 0.66 0.897429
Target:  5'- cGUUCUUCggcGCCGa---CGCCCCCu -3'
miRNA:   3'- aCGGGAAGaaaCGGUgcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 74299 0.75 0.41094
Target:  5'- cGCCCUggcgccgCgcagcGCCGCGggCGCCCCUc -3'
miRNA:   3'- aCGGGAa------Gaaa--CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 72343 0.7 0.656104
Target:  5'- gGCCCggCUUgUG-CGCGaucUCGCCCCCc -3'
miRNA:   3'- aCGGGaaGAA-ACgGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 71724 0.75 0.428665
Target:  5'- gGCCCgcCggcGCCGCGUgCGCUCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 71284 0.66 0.897429
Target:  5'- aGCCg-UCgc-GCCAUG--CGCCCCCc -3'
miRNA:   3'- aCGGgaAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 68147 0.66 0.876724
Target:  5'- cUGcCCCUUCUccggcGCCGCGccgcaGCCCgCCu -3'
miRNA:   3'- -AC-GGGAAGAaa---CGGUGCaag--CGGG-GG- -5'
6352 5' -56 NC_001847.1 + 67313 0.69 0.737128
Target:  5'- gGCCCUUUUUggGCCGCGcggaCGCCgCg -3'
miRNA:   3'- aCGGGAAGAAa-CGGUGCaa--GCGGgGg -5'
6352 5' -56 NC_001847.1 + 67061 0.7 0.686881
Target:  5'- cGCUCgcgcc-GCgGCGUUCGCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGgUGCAAGCGGGGg -5'
6352 5' -56 NC_001847.1 + 66928 0.71 0.62515
Target:  5'- gGCCCcgCcgcgGCC-CGUgCGCCCCCu -3'
miRNA:   3'- aCGGGaaGaaa-CGGuGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 66675 0.67 0.82093
Target:  5'- aUGCCCgUCUUcaacccucGCCuccacaGCGggCGCUCCCg -3'
miRNA:   3'- -ACGGGaAGAAa-------CGG------UGCaaGCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.