Results 141 - 160 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 33757 | 0.68 | 0.766236 |
Target: 5'- uUGCCgg-CggcGCCGCGggCaGCCCCCg -3' miRNA: 3'- -ACGGgaaGaaaCGGUGCaaG-CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 33682 | 0.73 | 0.491137 |
Target: 5'- cGCCCUUgCg--GCCGCGcggcggcaguuuccgCGCCCCCc -3' miRNA: 3'- aCGGGAA-GaaaCGGUGCaa-------------GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 32441 | 0.67 | 0.854023 |
Target: 5'- gGCCUUUCgccGCCcgcccgGCGcccUGCCCCCg -3' miRNA: 3'- aCGGGAAGaaaCGG------UGCaa-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 32265 | 0.67 | 0.837028 |
Target: 5'- gGCCCgggcccGCCGCGccgaaauUUcCGCCCCCc -3' miRNA: 3'- aCGGGaagaaaCGGUGC-------AA-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 31537 | 0.7 | 0.656104 |
Target: 5'- gUGCCCcaggCgUUUGUCGCGcgcaUGCCCCCg -3' miRNA: 3'- -ACGGGaa--G-AAACGGUGCaa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 31373 | 0.71 | 0.614832 |
Target: 5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3' miRNA: 3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 31210 | 0.7 | 0.666394 |
Target: 5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3' miRNA: 3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 29915 | 0.69 | 0.756642 |
Target: 5'- cGCCCgcCUgUGCC-CGcgCGCCCgCg -3' miRNA: 3'- aCGGGaaGAaACGGuGCaaGCGGGgG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 29902 | 0.67 | 0.82093 |
Target: 5'- gGCCCUgccggccGCCGCGggggGCCCCUc -3' miRNA: 3'- aCGGGAagaaa--CGGUGCaag-CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 28970 | 0.71 | 0.635473 |
Target: 5'- aGCCUgcg---GCgCGCGUaCGCCCCCa -3' miRNA: 3'- aCGGGaagaaaCG-GUGCAaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 28372 | 0.67 | 0.854023 |
Target: 5'- cGCCC-UCgccGCCggagACGg-CGCCCCCc -3' miRNA: 3'- aCGGGaAGaaaCGG----UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 28340 | 0.72 | 0.583988 |
Target: 5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3' miRNA: 3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 27458 | 0.69 | 0.727226 |
Target: 5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3' miRNA: 3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 27338 | 0.71 | 0.614832 |
Target: 5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3' miRNA: 3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 27095 | 0.72 | 0.563589 |
Target: 5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3' miRNA: 3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 26508 | 0.66 | 0.861803 |
Target: 5'- gGCCaCUUC--UGCaGCG-UCGCCCgCCg -3' miRNA: 3'- aCGG-GAAGaaACGgUGCaAGCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 23854 | 0.66 | 0.897429 |
Target: 5'- cGCCCccg---GCCgaGCGc-CGCCCCCg -3' miRNA: 3'- aCGGGaagaaaCGG--UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 21958 | 0.68 | 0.78505 |
Target: 5'- cGUCCgggcgCUggGCCGCGgcgccggUUGCCgCCCg -3' miRNA: 3'- aCGGGaa---GAaaCGGUGCa------AGCGG-GGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 20229 | 0.67 | 0.82093 |
Target: 5'- aGCCCccg--UGCCccaGgggcUCGCCCCCg -3' miRNA: 3'- aCGGGaagaaACGGug-Ca---AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 18575 | 0.68 | 0.766236 |
Target: 5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3' miRNA: 3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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