Results 81 - 100 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 107166 | 0.71 | 0.604527 |
Target: 5'- cGCCCcg----GCCGCGgcCGCCUCCa -3' miRNA: 3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 4383 | 0.67 | 0.829485 |
Target: 5'- -aCUCUUCgacggcGCCACGgUCGCCgCCg -3' miRNA: 3'- acGGGAAGaaa---CGGUGCaAGCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 66675 | 0.67 | 0.82093 |
Target: 5'- aUGCCCgUCUUcaacccucGCCuccacaGCGggCGCUCCCg -3' miRNA: 3'- -ACGGGaAGAAa-------CGG------UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 62148 | 0.68 | 0.806883 |
Target: 5'- cGCCCgcgCUgcgGCCagcucccgcgcgggcGCGUccgCGUCCCCa -3' miRNA: 3'- aCGGGaa-GAaa-CGG---------------UGCAa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 118493 | 0.74 | 0.456077 |
Target: 5'- cGCCCgcgcc-GCCACGUUCGCcaagagcaaCCCCg -3' miRNA: 3'- aCGGGaagaaaCGGUGCAAGCG---------GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 38324 | 0.73 | 0.523424 |
Target: 5'- cGCCCgcgcggUCgccGCCGCuGcgCGCCCCCc -3' miRNA: 3'- aCGGGa-----AGaaaCGGUG-CaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 131153 | 0.72 | 0.583988 |
Target: 5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3' miRNA: 3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 105693 | 0.68 | 0.803306 |
Target: 5'- gGCgCUUCg--GCCGCGggcggcgccaCGCCCCa -3' miRNA: 3'- aCGgGAAGaaaCGGUGCaa--------GCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 84864 | 0.68 | 0.803306 |
Target: 5'- aGCCCggCUaggcgGcCCACGUaCGCgCCCa -3' miRNA: 3'- aCGGGaaGAaa---C-GGUGCAaGCGgGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 101257 | 0.68 | 0.794252 |
Target: 5'- cGCCCgcg---GCCACGcgcggcggCGCCUCCu -3' miRNA: 3'- aCGGGaagaaaCGGUGCaa------GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 91755 | 0.68 | 0.78505 |
Target: 5'- cGCCCaUCg--GuCCGCGggCGCUCCg -3' miRNA: 3'- aCGGGaAGaaaC-GGUGCaaGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 51168 | 0.66 | 0.861803 |
Target: 5'- gGCgCCUUCgc-GCgguacgguaCACGUcucCGCCCCCg -3' miRNA: 3'- aCG-GGAAGaaaCG---------GUGCAa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 100398 | 0.66 | 0.861803 |
Target: 5'- cGCCag-CUcgGCCGCGUcgaaggcggaguUCGCCUCg -3' miRNA: 3'- aCGGgaaGAaaCGGUGCA------------AGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 110375 | 0.67 | 0.854023 |
Target: 5'- cGCUCUUCgacGaCCGCGcgUCGCaCCUCa -3' miRNA: 3'- aCGGGAAGaaaC-GGUGCa-AGCG-GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 18575 | 0.68 | 0.766236 |
Target: 5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3' miRNA: 3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 33757 | 0.68 | 0.766236 |
Target: 5'- uUGCCgg-CggcGCCGCGggCaGCCCCCg -3' miRNA: 3'- -ACGGgaaGaaaCGGUGCaaG-CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 60124 | 0.68 | 0.775708 |
Target: 5'- gGCgCCUUC--UGCC-CGcUgGCCCCCc -3' miRNA: 3'- aCG-GGAAGaaACGGuGCaAgCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 6878 | 0.66 | 0.883854 |
Target: 5'- cGCCUUgcgcUUUUGCauUugGcUCGCCCCUg -3' miRNA: 3'- aCGGGAa---GAAACG--GugCaAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 80685 | 0.66 | 0.883854 |
Target: 5'- cGCCCUccuccUCgg-GCU-CGUcccCGCCCCCc -3' miRNA: 3'- aCGGGA-----AGaaaCGGuGCAa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 36278 | 0.68 | 0.78505 |
Target: 5'- aGCgCCUUCggcUUGCCGCacgaaGUUCGCgCgCCg -3' miRNA: 3'- aCG-GGAAGa--AACGGUG-----CAAGCGgG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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