miRNA display CGI


Results 121 - 140 of 192 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 18575 0.68 0.766236
Target:  5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3'
miRNA:   3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5'
6352 5' -56 NC_001847.1 + 33757 0.68 0.766236
Target:  5'- uUGCCgg-CggcGCCGCGggCaGCCCCCg -3'
miRNA:   3'- -ACGGgaaGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 36278 0.68 0.78505
Target:  5'- aGCgCCUUCggcUUGCCGCacgaaGUUCGCgCgCCg -3'
miRNA:   3'- aCG-GGAAGa--AACGGUG-----CAAGCGgG-GG- -5'
6352 5' -56 NC_001847.1 + 27338 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 4329 0.78 0.28665
Target:  5'- gGCCgCUUCg--GCCGCGgcCGCCUCCg -3'
miRNA:   3'- aCGG-GAAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 74299 0.75 0.41094
Target:  5'- cGCCCUggcgccgCgcagcGCCGCGggCGCCCCUc -3'
miRNA:   3'- aCGGGAa------Gaaa--CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 71724 0.75 0.428665
Target:  5'- gGCCCgcCggcGCCGCGUgCGCUCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 33682 0.73 0.491137
Target:  5'- cGCCCUUgCg--GCCGCGcggcggcaguuuccgCGCCCCCc -3'
miRNA:   3'- aCGGGAA-GaaaCGGUGCaa-------------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 94965 0.73 0.523424
Target:  5'- gGCCgUUCc--GCCGCGcgCaGCCCCCg -3'
miRNA:   3'- aCGGgAAGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 50450 0.73 0.533371
Target:  5'- aGCgCCUUCUacgGCCACGUgagCGCCgCg -3'
miRNA:   3'- aCG-GGAAGAaa-CGGUGCAa--GCGGgGg -5'
6352 5' -56 NC_001847.1 + 66324 0.72 0.543385
Target:  5'- gGCCCUUUUgcGUCAuUGUUC-CCCCCg -3'
miRNA:   3'- aCGGGAAGAaaCGGU-GCAAGcGGGGG- -5'
6352 5' -56 NC_001847.1 + 127061 0.72 0.543385
Target:  5'- cGCCgaUCUc-GCCGCGgcggUGCCCCCc -3'
miRNA:   3'- aCGGgaAGAaaCGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 5988 0.72 0.562574
Target:  5'- -cCCCUUCUucccugcUUGCuCACGgcCGCCCCUc -3'
miRNA:   3'- acGGGAAGA-------AACG-GUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 27095 0.72 0.563589
Target:  5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3'
miRNA:   3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 28340 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 115946 0.71 0.594243
Target:  5'- cGCCg-UCUggGCCACagacccCGCCCCCg -3'
miRNA:   3'- aCGGgaAGAaaCGGUGcaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 707 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 99961 0.71 0.594243
Target:  5'- cGCuCCUccUCgaagGCCGCGU--GCCCCCg -3'
miRNA:   3'- aCG-GGA--AGaaa-CGGUGCAagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 4353 0.71 0.604527
Target:  5'- cGCCCcg----GCCGCGgcCGCCUCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 54090 0.71 0.614832
Target:  5'- gGCCCcgCccacGcCCACG-UCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaa-C-GGUGCaAGCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.