miRNA display CGI


Results 141 - 160 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 707 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 115946 0.71 0.594243
Target:  5'- cGCCg-UCUggGCCACagacccCGCCCCCg -3'
miRNA:   3'- aCGGgaAGAaaCGGUGcaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 28340 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 27095 0.72 0.563589
Target:  5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3'
miRNA:   3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 72343 0.7 0.656104
Target:  5'- gGCCCggCUUgUG-CGCGaucUCGCCCCCc -3'
miRNA:   3'- aCGGGaaGAA-ACgGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 31210 0.7 0.666394
Target:  5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3'
miRNA:   3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 20229 0.67 0.82093
Target:  5'- aGCCCccg--UGCCccaGgggcUCGCCCCCg -3'
miRNA:   3'- aCGGGaagaaACGGug-Ca---AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6324 0.68 0.812201
Target:  5'- gGCCCUUUUUgUGCgCGCcugCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAA-ACG-GUGcaaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 7149 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5'
6352 5' -56 NC_001847.1 + 116152 0.68 0.803306
Target:  5'- gGCCCgaggcgCUggcgGCCGCGggCGCCgCg -3'
miRNA:   3'- aCGGGaa----GAaa--CGGUGCaaGCGGgGg -5'
6352 5' -56 NC_001847.1 + 105693 0.68 0.803306
Target:  5'- gGCgCUUCg--GCCGCGggcggcgccaCGCCCCa -3'
miRNA:   3'- aCGgGAAGaaaCGGUGCaa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 84864 0.68 0.803306
Target:  5'- aGCCCggCUaggcgGcCCACGUaCGCgCCCa -3'
miRNA:   3'- aCGGGaaGAaa---C-GGUGCAaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 101257 0.68 0.794252
Target:  5'- cGCCCgcg---GCCACGcgcggcggCGCCUCCu -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 91755 0.68 0.78505
Target:  5'- cGCCCaUCg--GuCCGCGggCGCUCCg -3'
miRNA:   3'- aCGGGaAGaaaC-GGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 36278 0.68 0.78505
Target:  5'- aGCgCCUUCggcUUGCCGCacgaaGUUCGCgCgCCg -3'
miRNA:   3'- aCG-GGAAGa--AACGGUG-----CAAGCGgG-GG- -5'
6352 5' -56 NC_001847.1 + 60124 0.68 0.775708
Target:  5'- gGCgCCUUC--UGCC-CGcUgGCCCCCc -3'
miRNA:   3'- aCG-GGAAGaaACGGuGCaAgCGGGGG- -5'
6352 5' -56 NC_001847.1 + 33757 0.68 0.766236
Target:  5'- uUGCCgg-CggcGCCGCGggCaGCCCCCg -3'
miRNA:   3'- -ACGGgaaGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 18575 0.68 0.766236
Target:  5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3'
miRNA:   3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5'
6352 5' -56 NC_001847.1 + 52657 0.7 0.676656
Target:  5'- cGCCCgcacg-GCCGCGggcUCGUCCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCa--AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 120118 0.7 0.666394
Target:  5'- cGCCCggCg--GCCGCGgcucgcgCGgCCCCa -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaa-----GCgGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.