Results 61 - 80 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 16380 | 0.66 | 0.876724 |
Target: 5'- gGCCCU----UG-CAUGUUCGCCCgCu -3' miRNA: 3'- aCGGGAagaaACgGUGCAAGCGGGgG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 2516 | 0.66 | 0.876724 |
Target: 5'- gGCCCUUCUUccuucccucgGaCC-CGgcggCGCUCCCg -3' miRNA: 3'- aCGGGAAGAAa---------C-GGuGCaa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 28372 | 0.67 | 0.854023 |
Target: 5'- cGCCC-UCgccGCCggagACGg-CGCCCCCc -3' miRNA: 3'- aCGGGaAGaaaCGG----UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 101623 | 0.67 | 0.854023 |
Target: 5'- cGCCCggCgccuCCGCGgcggCGCCCgCCg -3' miRNA: 3'- aCGGGaaGaaacGGUGCaa--GCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 55298 | 0.67 | 0.854023 |
Target: 5'- cGCCggaCUUCUcagacGCCGCGgUCGCCCaCUu -3' miRNA: 3'- aCGG---GAAGAaa---CGGUGCaAGCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 32441 | 0.67 | 0.854023 |
Target: 5'- gGCCUUUCgccGCCcgcccgGCGcccUGCCCCCg -3' miRNA: 3'- aCGGGAAGaaaCGG------UGCaa-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 17207 | 0.67 | 0.854023 |
Target: 5'- gGCCCagCUcUGCgGCGcuuacgUUGCCCCa -3' miRNA: 3'- aCGGGaaGAaACGgUGCa-----AGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 15878 | 0.67 | 0.854023 |
Target: 5'- gGCCC-UCgacgaGCCGCGcgggCGCCgCCa -3' miRNA: 3'- aCGGGaAGaaa--CGGUGCaa--GCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 101678 | 0.67 | 0.846039 |
Target: 5'- cGCCUcgaagCga-GCCAUGcUCGCCUCCa -3' miRNA: 3'- aCGGGaa---GaaaCGGUGCaAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 6963 | 0.67 | 0.846039 |
Target: 5'- cGCCC-----UGCCGC---CGCCCCCu -3' miRNA: 3'- aCGGGaagaaACGGUGcaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 110375 | 0.67 | 0.854023 |
Target: 5'- cGCUCUUCgacGaCCGCGcgUCGCaCCUCa -3' miRNA: 3'- aCGGGAAGaaaC-GGUGCa-AGCG-GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 100398 | 0.66 | 0.861803 |
Target: 5'- cGCCag-CUcgGCCGCGUcgaaggcggaguUCGCCUCg -3' miRNA: 3'- aCGGgaaGAaaCGGUGCA------------AGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 106074 | 0.66 | 0.876724 |
Target: 5'- cGCCCgccaccGCCACGca-GCCCaCCg -3' miRNA: 3'- aCGGGaagaaaCGGUGCaagCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 75077 | 0.66 | 0.876724 |
Target: 5'- uUGCCCUccgugucgcucUCUUcgcGCCGCc-UCGCgCCCg -3' miRNA: 3'- -ACGGGA-----------AGAAa--CGGUGcaAGCGgGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 48712 | 0.66 | 0.876724 |
Target: 5'- cUGCCCgc----GCCGCGcagCGCCgCCa -3' miRNA: 3'- -ACGGGaagaaaCGGUGCaa-GCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 80754 | 0.66 | 0.869372 |
Target: 5'- cGCCCgccUCgc--CCGCGgcCGCCCgCCg -3' miRNA: 3'- aCGGGa--AGaaacGGUGCaaGCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 85432 | 0.66 | 0.869372 |
Target: 5'- cGCCCac--UUGCacggGCGccgCGCCCCCg -3' miRNA: 3'- aCGGGaagaAACGg---UGCaa-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 54939 | 0.66 | 0.869372 |
Target: 5'- cGCCCUgcgCUUcGCgGCGcaccCGCCCgCa -3' miRNA: 3'- aCGGGAa--GAAaCGgUGCaa--GCGGGgG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 51168 | 0.66 | 0.861803 |
Target: 5'- gGCgCCUUCgc-GCgguacgguaCACGUcucCGCCCCCg -3' miRNA: 3'- aCG-GGAAGaaaCG---------GUGCAa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 122550 | 0.66 | 0.861803 |
Target: 5'- gGCCCUUCcgacaGCCGCucgUCGCgCUCu -3' miRNA: 3'- aCGGGAAGaaa--CGGUGca-AGCGgGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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