miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 135023 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 134557 0.66 0.940849
Target:  5'- ---gGCCGCGG--AGGGCCAgGa--- -3'
miRNA:   3'- guaaUGGCGCCagUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 134244 0.66 0.930729
Target:  5'- ---gGCgGCGGcCGGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGgCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 134129 0.76 0.4507
Target:  5'- ---cGCCGCGGgCGGcGGCCugGUGGAg -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGugCAUUU- -5'
6353 3' -54 NC_001847.1 + 133724 0.75 0.460211
Target:  5'- --gUGCCugGCGGgcgCGGGGCCGCGUGc- -3'
miRNA:   3'- guaAUGG--CGCCa--GUCCCGGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 133534 0.66 0.940849
Target:  5'- --cUGCCGCGGcgCAGuGcGCCGCGc--- -3'
miRNA:   3'- guaAUGGCGCCa-GUC-C-CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 132037 0.7 0.76779
Target:  5'- ---gGCCGCGG-C-GGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 131664 0.68 0.857183
Target:  5'- --cUGCCGcCGGUCGGGgacGCCAUGg--- -3'
miRNA:   3'- guaAUGGC-GCCAGUCC---CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 127349 0.68 0.857183
Target:  5'- --cUGCCGCGGcaGGGGCgGCGg--- -3'
miRNA:   3'- guaAUGGCGCCagUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 127033 0.78 0.322483
Target:  5'- ----cCCGCGGUuguaCGGGGCCACGUGGGu -3'
miRNA:   3'- guaauGGCGCCA----GUCCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 126005 1.06 0.005214
Target:  5'- cCAUUACCGCGGUCAGGGCCACGUAAAa -3'
miRNA:   3'- -GUAAUGGCGCCAGUCCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 125234 0.66 0.940849
Target:  5'- ----uCCGCGGgggCGGGGCC-CGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGuGCauuu -5'
6353 3' -54 NC_001847.1 + 122919 0.67 0.894275
Target:  5'- ---cGCCGUGaUUGGGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCcAGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 121400 0.68 0.865061
Target:  5'- ---gACCGgGGgCAGGaGCUGCGUGGAg -3'
miRNA:   3'- guaaUGGCgCCaGUCC-CGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 120838 0.68 0.872715
Target:  5'- ---aGCaGCGGgagCGGGGCCGCGa--- -3'
miRNA:   3'- guaaUGgCGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 120032 0.67 0.900978
Target:  5'- ---cGCCGCcGUCAGGGCCGu----- -3'
miRNA:   3'- guaaUGGCGcCAGUCCCGGUgcauuu -5'
6353 3' -54 NC_001847.1 + 119734 0.67 0.887327
Target:  5'- gCcgUGCCGCGcucCAGGGCCGCccaGUGGc -3'
miRNA:   3'- -GuaAUGGCGCca-GUCCCGGUG---CAUUu -5'
6353 3' -54 NC_001847.1 + 119216 0.68 0.865061
Target:  5'- ---cGCCGCGGccaccgCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 119156 0.68 0.865061
Target:  5'- ---cGCCGCGGccgccgCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 119096 0.68 0.865061
Target:  5'- ---cGCCGCGGccgccgCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.