Results 1 - 20 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 5' | -62.7 | NC_001847.1 | + | 95666 | 0.66 | 0.551576 |
Target: 5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3' miRNA: 3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 2243 | 0.66 | 0.579825 |
Target: 5'- gGGCgCggGCGuGUGGUagUCCccGGGCGGCAc -3' miRNA: 3'- -CCG-Ga-CGC-CACCG--AGGcuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 46911 | 0.66 | 0.57102 |
Target: 5'- aGGCUUcGgGGggcgcgucgggcccgGGCUCCGGGccgcguGCGGCGa -3' miRNA: 3'- -CCGGA-CgCCa--------------CCGAGGCUCu-----CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 32782 | 0.66 | 0.570044 |
Target: 5'- -cCCUGUGGggGGagggCCGGGGGCGGaCGg -3' miRNA: 3'- ccGGACGCCa-CCga--GGCUCUCGCC-GU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 23418 | 0.66 | 0.570044 |
Target: 5'- gGGUCgucgGCGG-GGCgUCCGGGGucGuCGGCGg -3' miRNA: 3'- -CCGGa---CGCCaCCG-AGGCUCU--C-GCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 104534 | 0.66 | 0.569068 |
Target: 5'- cGGCgCUgcGCGGcGGCcCCGGGGccgcuacGCGGCGg -3' miRNA: 3'- -CCG-GA--CGCCaCCGaGGCUCU-------CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 34129 | 0.66 | 0.560303 |
Target: 5'- cGGCCgcgGCGGcGGCaguaacugCCGccgcGGCGGCAc -3' miRNA: 3'- -CCGGa--CGCCaCCGa-------GGCuc--UCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 98782 | 0.66 | 0.559331 |
Target: 5'- gGGCCgcgGCGGcgccgcgUGGCgcgCCGcGGcgcGCGGCAc -3' miRNA: 3'- -CCGGa--CGCC-------ACCGa--GGCuCU---CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 95720 | 0.66 | 0.551576 |
Target: 5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3' miRNA: 3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 96460 | 0.66 | 0.579825 |
Target: 5'- aGGCgCUGCGGagaccaGGCU-UGcGGGCGGCGg -3' miRNA: 3'- -CCG-GACGCCa-----CCGAgGCuCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 29223 | 0.66 | 0.579825 |
Target: 5'- cGGCCgcgGCGGgccgcGGCcugCCGGccGCGGCc -3' miRNA: 3'- -CCGGa--CGCCa----CCGa--GGCUcuCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 95774 | 0.66 | 0.579825 |
Target: 5'- gGGCC-GCucUGGCgCgGGGGGCGGCGc -3' miRNA: 3'- -CCGGaCGccACCGaGgCUCUCGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 37109 | 0.66 | 0.599487 |
Target: 5'- cGGCCcGCuGGUGuucauGCUCUGGG-GCGcGCAc -3' miRNA: 3'- -CCGGaCG-CCAC-----CGAGGCUCuCGC-CGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 13242 | 0.66 | 0.599487 |
Target: 5'- uGGCCaGCGG-GGC-CaCGcGGGCGGUu -3' miRNA: 3'- -CCGGaCGCCaCCGaG-GCuCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 123152 | 0.66 | 0.599487 |
Target: 5'- uGCgUGCGGUacGUUCCG-GAGaCGGCGc -3' miRNA: 3'- cCGgACGCCAc-CGAGGCuCUC-GCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 31697 | 0.66 | 0.599487 |
Target: 5'- gGGCCUcggggGCGGggggaGGCgcgggCCGcgcgccgcugcGGAGCGGCc -3' miRNA: 3'- -CCGGA-----CGCCa----CCGa----GGC-----------UCUCGCCGu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 8601 | 0.66 | 0.599487 |
Target: 5'- cGCCaGgGGcGGCgcucggCCGGGGGCGGgGg -3' miRNA: 3'- cCGGaCgCCaCCGa-----GGCUCUCGCCgU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 111082 | 0.66 | 0.598501 |
Target: 5'- gGGCCUG-GGcccGGCUgCgCGAGAaggucgcGCGGCAc -3' miRNA: 3'- -CCGGACgCCa--CCGA-G-GCUCU-------CGCCGU- -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 117035 | 0.66 | 0.589642 |
Target: 5'- uGCCcgGCGGgGGCUcgCCGAGgaGGCGGa- -3' miRNA: 3'- cCGGa-CGCCaCCGA--GGCUC--UCGCCgu -5' |
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6353 | 5' | -62.7 | NC_001847.1 | + | 31601 | 0.66 | 0.583748 |
Target: 5'- gGGCCcGCGGgaagggagggagggGGCg-CGAcGGCGGCAa -3' miRNA: 3'- -CCGGaCGCCa-------------CCGagGCUcUCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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