miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 95666 0.66 0.551576
Target:  5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 2243 0.66 0.579825
Target:  5'- gGGCgCggGCGuGUGGUagUCCccGGGCGGCAc -3'
miRNA:   3'- -CCG-Ga-CGC-CACCG--AGGcuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 46911 0.66 0.57102
Target:  5'- aGGCUUcGgGGggcgcgucgggcccgGGCUCCGGGccgcguGCGGCGa -3'
miRNA:   3'- -CCGGA-CgCCa--------------CCGAGGCUCu-----CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32782 0.66 0.570044
Target:  5'- -cCCUGUGGggGGagggCCGGGGGCGGaCGg -3'
miRNA:   3'- ccGGACGCCa-CCga--GGCUCUCGCC-GU- -5'
6353 5' -62.7 NC_001847.1 + 23418 0.66 0.570044
Target:  5'- gGGUCgucgGCGG-GGCgUCCGGGGucGuCGGCGg -3'
miRNA:   3'- -CCGGa---CGCCaCCG-AGGCUCU--C-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 104534 0.66 0.569068
Target:  5'- cGGCgCUgcGCGGcGGCcCCGGGGccgcuacGCGGCGg -3'
miRNA:   3'- -CCG-GA--CGCCaCCGaGGCUCU-------CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34129 0.66 0.560303
Target:  5'- cGGCCgcgGCGGcGGCaguaacugCCGccgcGGCGGCAc -3'
miRNA:   3'- -CCGGa--CGCCaCCGa-------GGCuc--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 98782 0.66 0.559331
Target:  5'- gGGCCgcgGCGGcgccgcgUGGCgcgCCGcGGcgcGCGGCAc -3'
miRNA:   3'- -CCGGa--CGCC-------ACCGa--GGCuCU---CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 95720 0.66 0.551576
Target:  5'- gGGCCgcucuggcgcgggggGCGGcgcgggccgcucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGa--------------CGCC------------ACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96460 0.66 0.579825
Target:  5'- aGGCgCUGCGGagaccaGGCU-UGcGGGCGGCGg -3'
miRNA:   3'- -CCG-GACGCCa-----CCGAgGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 29223 0.66 0.579825
Target:  5'- cGGCCgcgGCGGgccgcGGCcugCCGGccGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCa----CCGa--GGCUcuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 95774 0.66 0.579825
Target:  5'- gGGCC-GCucUGGCgCgGGGGGCGGCGc -3'
miRNA:   3'- -CCGGaCGccACCGaGgCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 37109 0.66 0.599487
Target:  5'- cGGCCcGCuGGUGuucauGCUCUGGG-GCGcGCAc -3'
miRNA:   3'- -CCGGaCG-CCAC-----CGAGGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 13242 0.66 0.599487
Target:  5'- uGGCCaGCGG-GGC-CaCGcGGGCGGUu -3'
miRNA:   3'- -CCGGaCGCCaCCGaG-GCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 123152 0.66 0.599487
Target:  5'- uGCgUGCGGUacGUUCCG-GAGaCGGCGc -3'
miRNA:   3'- cCGgACGCCAc-CGAGGCuCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 31697 0.66 0.599487
Target:  5'- gGGCCUcggggGCGGggggaGGCgcgggCCGcgcgccgcugcGGAGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCa----CCGa----GGC-----------UCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 8601 0.66 0.599487
Target:  5'- cGCCaGgGGcGGCgcucggCCGGGGGCGGgGg -3'
miRNA:   3'- cCGGaCgCCaCCGa-----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 111082 0.66 0.598501
Target:  5'- gGGCCUG-GGcccGGCUgCgCGAGAaggucgcGCGGCAc -3'
miRNA:   3'- -CCGGACgCCa--CCGA-G-GCUCU-------CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 117035 0.66 0.589642
Target:  5'- uGCCcgGCGGgGGCUcgCCGAGgaGGCGGa- -3'
miRNA:   3'- cCGGa-CGCCaCCGA--GGCUC--UCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 31601 0.66 0.583748
Target:  5'- gGGCCcGCGGgaagggagggagggGGCg-CGAcGGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCa-------------CCGagGCUcUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.